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C17orf97 (chromosome 17 open reading frame 97)

Identity

Alias_symbol (synonym)LOC400566
LIAT1
Other aliasCK20
HGNC (Hugo) C17orf97
LocusID (NCBI) 400566
Atlas_Id 61006
Location 17p13.3  [Link to chromosome band 17p13]
Location_base_pair Starts at 410327 and ends at 414666 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C17orf97   33800
Cards
Entrez_Gene (NCBI)C17orf97  400566  chromosome 17 open reading frame 97
AliasesCK20; LIAT1
GeneCards (Weizmann)C17orf97
Ensembl hg19 (Hinxton)ENSG00000187624 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187624 [Gene_View]  chr17:410327-414666 [Contig_View]  C17orf97 [Vega]
ICGC DataPortalENSG00000187624
TCGA cBioPortalC17orf97
AceView (NCBI)C17orf97
Genatlas (Paris)C17orf97
WikiGenes400566
SOURCE (Princeton)C17orf97
Genetics Home Reference (NIH)C17orf97
Genomic and cartography
GoldenPath hg38 (UCSC)C17orf97  -     chr17:410327-414666 +  17p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C17orf97  -     17p13.3   [Description]    (hg19-Feb_2009)
EnsemblC17orf97 - 17p13.3 [CytoView hg19]  C17orf97 - 17p13.3 [CytoView hg38]
Mapping of homologs : NCBIC17orf97 [Mapview hg19]  C17orf97 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK128660 BC057385 BC070116 BC141806 BG056786
RefSeq transcript (Entrez)NM_001013672
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C17orf97
Cluster EST : UnigeneHs.499607 [ NCBI ]
CGAP (NCI)Hs.499607
Alternative Splicing GalleryENSG00000187624
Gene ExpressionC17orf97 [ NCBI-GEO ]   C17orf97 [ EBI - ARRAY_EXPRESS ]   C17orf97 [ SEEK ]   C17orf97 [ MEM ]
Gene Expression Viewer (FireBrowse)C17orf97 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400566
GTEX Portal (Tissue expression)C17orf97
Human Protein AtlasENSG00000187624-C17orf97 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZQX7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZQX7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZQX7
Splice isoforms : SwissVarQ6ZQX7
PhosPhoSitePlusQ6ZQX7
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C17orf97
DMDM Disease mutations400566
Blocks (Seattle)C17orf97
SuperfamilyQ6ZQX7
Human Protein Atlas [tissue]ENSG00000187624-C17orf97 [tissue]
Peptide AtlasQ6ZQX7
HPRD18416
IPIIPI00895816   IPI00418735   IPI00895773   IPI00895909   IPI00981916   IPI00946895   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZQX7
IntAct (EBI)Q6ZQX7
FunCoupENSG00000187624
BioGRIDC17orf97
STRING (EMBL)C17orf97
ZODIACC17orf97
Ontologies - Pathways
QuickGOQ6ZQX7
Ontology : AmiGOprotein arginylation  
Ontology : EGO-EBIprotein arginylation  
NDEx NetworkC17orf97
Atlas of Cancer Signalling NetworkC17orf97
Wikipedia pathwaysC17orf97
Orthology - Evolution
OrthoDB400566
GeneTree (enSembl)ENSG00000187624
Phylogenetic Trees/Animal Genes : TreeFamC17orf97
HOVERGENQ6ZQX7
HOGENOMQ6ZQX7
Homologs : HomoloGeneC17orf97
Homology/Alignments : Family Browser (UCSC)C17orf97
Gene fusions - Rearrangements
Fusion: Tumor Portal C17orf97
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC17orf97 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C17orf97
dbVarC17orf97
ClinVarC17orf97
1000_GenomesC17orf97 
Exome Variant ServerC17orf97
ExAC (Exome Aggregation Consortium)ENSG00000187624
GNOMAD BrowserENSG00000187624
Genetic variants : HAPMAP400566
Genomic Variants (DGV)C17orf97 [DGVbeta]
DECIPHERC17orf97 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC17orf97 
Mutations
ICGC Data PortalC17orf97 
TCGA Data PortalC17orf97 
Broad Tumor PortalC17orf97
OASIS PortalC17orf97 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDC17orf97
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C17orf97
DgiDB (Drug Gene Interaction Database)C17orf97
DoCM (Curated mutations)C17orf97 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C17orf97 (select a term)
intoGenC17orf97
Cancer3DC17orf97(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC17orf97
Genetic Testing Registry C17orf97
NextProtQ6ZQX7 [Medical]
TSGene400566
GENETestsC17orf97
Target ValidationC17orf97
Huge Navigator C17orf97 [HugePedia]
snp3D : Map Gene to Disease400566
BioCentury BCIQC17orf97
ClinGenC17orf97
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400566
Chemical/Pharm GKB GenePA162378582
Clinical trialC17orf97
Miscellaneous
canSAR (ICR)C17orf97 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC17orf97
EVEXC17orf97
GoPubMedC17orf97
iHOPC17orf97
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:39:56 CET 2017

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