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C17orf98 (chromosome 17 open reading frame 98)

Identity

Alias_symbol (synonym)LOC388381
Other alias-
HGNC (Hugo) C17orf98
LocusID (NCBI) 388381
Atlas_Id 61007
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 38835088 and ends at 38841389 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
STARD3 (17q12) / C17orf98 (17q12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C17orf98   34492
Cards
Entrez_Gene (NCBI)C17orf98  388381  chromosome 17 open reading frame 98
Aliases
GeneCards (Weizmann)C17orf98
Ensembl hg19 (Hinxton)ENSG00000275489 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000275489 [Gene_View]  chr17:38835088-38841389 [Contig_View]  C17orf98 [Vega]
ICGC DataPortalENSG00000275489
TCGA cBioPortalC17orf98
AceView (NCBI)C17orf98
Genatlas (Paris)C17orf98
WikiGenes388381
SOURCE (Princeton)C17orf98
Genetics Home Reference (NIH)C17orf98
Genomic and cartography
GoldenPath hg38 (UCSC)C17orf98  -     chr17:38835088-38841389 -  17q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C17orf98  -     17q12   [Description]    (hg19-Feb_2009)
EnsemblC17orf98 - 17q12 [CytoView hg19]  C17orf98 - 17q12 [CytoView hg38]
Mapping of homologs : NCBIC17orf98 [Mapview hg19]  C17orf98 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW182930 DY654789
RefSeq transcript (Entrez)NM_001080465
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_187614
Consensus coding sequences : CCDS (NCBI)C17orf98
Cluster EST : UnigeneHs.250182 [ NCBI ]
CGAP (NCI)Hs.250182
Alternative Splicing GalleryENSG00000275489
Gene ExpressionC17orf98 [ NCBI-GEO ]   C17orf98 [ EBI - ARRAY_EXPRESS ]   C17orf98 [ SEEK ]   C17orf98 [ MEM ]
Gene Expression Viewer (FireBrowse)C17orf98 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388381
GTEX Portal (Tissue expression)C17orf98
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MV24   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MV24  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MV24
Splice isoforms : SwissVarA8MV24
PhosPhoSitePlusA8MV24
Domains : Interpro (EBI)DUF4542   
Domain families : Pfam (Sanger)DUF4542 (PF15075)   
Domain families : Pfam (NCBI)pfam15075   
Conserved Domain (NCBI)C17orf98
DMDM Disease mutations388381
Blocks (Seattle)C17orf98
SuperfamilyA8MV24
Human Protein AtlasENSG00000275489
Peptide AtlasA8MV24
IPIIPI00792894   
Protein Interaction databases
DIP (DOE-UCLA)A8MV24
IntAct (EBI)A8MV24
FunCoupENSG00000275489
BioGRIDC17orf98
STRING (EMBL)C17orf98
ZODIACC17orf98
Ontologies - Pathways
QuickGOA8MV24
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC17orf98
Atlas of Cancer Signalling NetworkC17orf98
Wikipedia pathwaysC17orf98
Orthology - Evolution
OrthoDB388381
GeneTree (enSembl)ENSG00000275489
Phylogenetic Trees/Animal Genes : TreeFamC17orf98
HOVERGENA8MV24
HOGENOMA8MV24
Homologs : HomoloGeneC17orf98
Homology/Alignments : Family Browser (UCSC)C17orf98
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC17orf98 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C17orf98
dbVarC17orf98
ClinVarC17orf98
1000_GenomesC17orf98 
Exome Variant ServerC17orf98
ExAC (Exome Aggregation Consortium)C17orf98 (select the gene name)
Genetic variants : HAPMAP388381
Genomic Variants (DGV)C17orf98 [DGVbeta]
DECIPHERC17orf98 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC17orf98 
Mutations
ICGC Data PortalC17orf98 
TCGA Data PortalC17orf98 
Broad Tumor PortalC17orf98
OASIS PortalC17orf98 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDC17orf98
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C17orf98
DgiDB (Drug Gene Interaction Database)C17orf98
DoCM (Curated mutations)C17orf98 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C17orf98 (select a term)
intoGenC17orf98
Cancer3DC17orf98(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC17orf98
Genetic Testing Registry C17orf98
NextProtA8MV24 [Medical]
TSGene388381
GENETestsC17orf98
Target ValidationC17orf98
Huge Navigator C17orf98 [HugePedia]
snp3D : Map Gene to Disease388381
BioCentury BCIQC17orf98
ClinGenC17orf98
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388381
Chemical/Pharm GKB GenePA162378591
Clinical trialC17orf98
Miscellaneous
canSAR (ICR)C17orf98 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC17orf98
EVEXC17orf98
GoPubMedC17orf98
iHOPC17orf98
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:55 CEST 2017

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