Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C17orf99 (chromosome 17 open reading frame 99)

Identity

Alias_symbol (synonym)GLPG464
UNQ464
Other alias
HGNC (Hugo) C17orf99
LocusID (NCBI) 100141515
Atlas_Id 61008
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 76142434 and ends at 76162364 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C17orf99   34490
Cards
Entrez_Gene (NCBI)C17orf99  100141515  chromosome 17 open reading frame 99
AliasesUNQ464
GeneCards (Weizmann)C17orf99
Ensembl hg19 (Hinxton)ENSG00000187997 [Gene_View]  chr17:76142434-76162364 [Contig_View]  C17orf99 [Vega]
Ensembl hg38 (Hinxton)ENSG00000187997 [Gene_View]  chr17:76142434-76162364 [Contig_View]  C17orf99 [Vega]
ICGC DataPortalENSG00000187997
TCGA cBioPortalC17orf99
AceView (NCBI)C17orf99
Genatlas (Paris)C17orf99
WikiGenes100141515
SOURCE (Princeton)C17orf99
Genetics Home Reference (NIH)C17orf99
Genomic and cartography
GoldenPath hg19 (UCSC)C17orf99  -     chr17:76142434-76162364 +  17q25.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C17orf99  -     17q25.3   [Description]    (hg38-Dec_2013)
EnsemblC17orf99 - 17q25.3 [CytoView hg19]  C17orf99 - 17q25.3 [CytoView hg38]
Mapping of homologs : NCBIC17orf99 [Mapview hg19]  C17orf99 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK303128 AY358510
RefSeq transcript (Entrez)NM_001163075
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)C17orf99
Cluster EST : UnigeneHs.633034 [ NCBI ]
CGAP (NCI)Hs.633034
Alternative Splicing GalleryENSG00000187997
Gene ExpressionC17orf99 [ NCBI-GEO ]   C17orf99 [ EBI - ARRAY_EXPRESS ]   C17orf99 [ SEEK ]   C17orf99 [ MEM ]
Gene Expression Viewer (FireBrowse)C17orf99 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100141515
GTEX Portal (Tissue expression)C17orf99
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UX52   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UX52  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UX52
Splice isoforms : SwissVarQ6UX52
PhosPhoSitePlusQ6UX52
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C17orf99
DMDM Disease mutations100141515
Blocks (Seattle)C17orf99
SuperfamilyQ6UX52
Human Protein AtlasENSG00000187997
Peptide AtlasQ6UX52
IPIIPI00419665   IPI00909806   
Protein Interaction databases
DIP (DOE-UCLA)Q6UX52
IntAct (EBI)Q6UX52
FunCoupENSG00000187997
BioGRIDC17orf99
STRING (EMBL)C17orf99
ZODIACC17orf99
Ontologies - Pathways
QuickGOQ6UX52
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkC17orf99
Atlas of Cancer Signalling NetworkC17orf99
Wikipedia pathwaysC17orf99
Orthology - Evolution
OrthoDB100141515
GeneTree (enSembl)ENSG00000187997
Phylogenetic Trees/Animal Genes : TreeFamC17orf99
HOVERGENQ6UX52
HOGENOMQ6UX52
Homologs : HomoloGeneC17orf99
Homology/Alignments : Family Browser (UCSC)C17orf99
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC17orf99 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C17orf99
dbVarC17orf99
ClinVarC17orf99
1000_GenomesC17orf99 
Exome Variant ServerC17orf99
ExAC (Exome Aggregation Consortium)C17orf99 (select the gene name)
Genetic variants : HAPMAP100141515
Genomic Variants (DGV)C17orf99 [DGVbeta]
DECIPHER (Syndromes)17:76142434-76162364  ENSG00000187997
CONAN: Copy Number AnalysisC17orf99 
Mutations
ICGC Data PortalC17orf99 
TCGA Data PortalC17orf99 
Broad Tumor PortalC17orf99
OASIS PortalC17orf99 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDC17orf99
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C17orf99
DgiDB (Drug Gene Interaction Database)C17orf99
DoCM (Curated mutations)C17orf99 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C17orf99 (select a term)
intoGenC17orf99
Cancer3DC17orf99(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC17orf99
Genetic Testing Registry C17orf99
NextProtQ6UX52 [Medical]
TSGene100141515
GENETestsC17orf99
Huge Navigator C17orf99 [HugePedia]
snp3D : Map Gene to Disease100141515
BioCentury BCIQC17orf99
ClinGenC17orf99
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100141515
Chemical/Pharm GKB GenePA162378601
Clinical trialC17orf99
Miscellaneous
canSAR (ICR)C17orf99 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC17orf99
EVEXC17orf99
GoPubMedC17orf99
iHOPC17orf99
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:56:45 CET 2017

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