Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C18orf15 (chromosome 18 open reading frame 15)

Identity

Alias_symbol (synonym)FLJ31338
HsT3231
Other alias
HGNC (Hugo) C18orf15
LocusID (NCBI) 147276
Atlas_Id 61010
Location 18p11.21  [Link to chromosome band 18p11]
Location_base_pair Starts at 13239542 and ends at 13242075 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)C18orf15   26447
Cards
Entrez_Gene (NCBI)C18orf15  147276  chromosome 18 open reading frame 15
AliasesHsT3231
GeneCards (Weizmann)C18orf15
Ensembl hg19 (Hinxton) [Gene_View]  chr18:13239542-13242075 [Contig_View]  C18orf15 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr18:13239542-13242075 [Contig_View]  C18orf15 [Vega]
TCGA cBioPortalC18orf15
AceView (NCBI)C18orf15
Genatlas (Paris)C18orf15
WikiGenes147276
SOURCE (Princeton)C18orf15
Genetics Home Reference (NIH)C18orf15
Genomic and cartography
GoldenPath hg19 (UCSC)C18orf15  -     chr18:13239542-13242075 +  18p11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C18orf15  -     18p11.21   [Description]    (hg38-Dec_2013)
EnsemblC18orf15 - 18p11.21 [CytoView hg19]  C18orf15 - 18p11.21 [CytoView hg38]
Mapping of homologs : NCBIC18orf15 [Mapview hg19]  C18orf15 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055900
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)AC_000150 NC_000018 NT_010859 NW_001838464
Consensus coding sequences : CCDS (NCBI)C18orf15
Cluster EST : UnigeneHs.675872 [ NCBI ]
CGAP (NCI)Hs.675872
Gene ExpressionC18orf15 [ NCBI-GEO ]   C18orf15 [ EBI - ARRAY_EXPRESS ]   C18orf15 [ SEEK ]   C18orf15 [ MEM ]
Gene Expression Viewer (FireBrowse)C18orf15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)147276
GTEX Portal (Tissue expression)C18orf15
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96N68   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96N68  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96N68
Splice isoforms : SwissVarQ96N68
PhosPhoSitePlusQ96N68
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C18orf15
DMDM Disease mutations147276
Blocks (Seattle)C18orf15
SuperfamilyQ96N68
Peptide AtlasQ96N68
IPIIPI00043468   
Protein Interaction databases
DIP (DOE-UCLA)Q96N68
IntAct (EBI)Q96N68
BioGRIDC18orf15
STRING (EMBL)C18orf15
ZODIACC18orf15
Ontologies - Pathways
QuickGOQ96N68
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkC18orf15
Atlas of Cancer Signalling NetworkC18orf15
Wikipedia pathwaysC18orf15
Orthology - Evolution
OrthoDB147276
Phylogenetic Trees/Animal Genes : TreeFamC18orf15
HOVERGENQ96N68
HOGENOMQ96N68
Homologs : HomoloGeneC18orf15
Homology/Alignments : Family Browser (UCSC)C18orf15
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC18orf15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C18orf15
dbVarC18orf15
ClinVarC18orf15
1000_GenomesC18orf15 
Exome Variant ServerC18orf15
ExAC (Exome Aggregation Consortium)C18orf15 (select the gene name)
Genetic variants : HAPMAP147276
Genomic Variants (DGV)C18orf15 [DGVbeta]
DECIPHER (Syndromes)18:13239542-13242075  
CONAN: Copy Number AnalysisC18orf15 
Mutations
ICGC Data PortalC18orf15 
TCGA Data PortalC18orf15 
Broad Tumor PortalC18orf15
OASIS PortalC18orf15 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDC18orf15
BioMutasearch C18orf15
DgiDB (Drug Gene Interaction Database)C18orf15
DoCM (Curated mutations)C18orf15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C18orf15 (select a term)
intoGenC18orf15
Cancer3DC18orf15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC18orf15
Genetic Testing Registry C18orf15
NextProtQ96N68 [Medical]
TSGene147276
GENETestsC18orf15
Huge Navigator C18orf15 [HugePedia]
snp3D : Map Gene to Disease147276
BioCentury BCIQC18orf15
ClinGenC18orf15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD147276
Chemical/Pharm GKB GenePA134950013
Clinical trialC18orf15
Miscellaneous
canSAR (ICR)C18orf15 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC18orf15
EVEXC18orf15
GoPubMedC18orf15
iHOPC18orf15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:56:46 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.