Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C18orf21 (chromosome 18 open reading frame 21)

Identity

Alias_symbol (synonym)PNAS-131
PNAS-124
HsT3108
Other aliasXTP13
HGNC (Hugo) C18orf21
LocusID (NCBI) 83608
Atlas_Id 61011
Location 18q12.2  [Link to chromosome band 18q12]
Location_base_pair Starts at 35972625 and ends at 35979287 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C18orf21   28802
Cards
Entrez_Gene (NCBI)C18orf21  83608  chromosome 18 open reading frame 21
AliasesHsT3108; PNAS-124; PNAS-131; XTP13
GeneCards (Weizmann)C18orf21
Ensembl hg19 (Hinxton)ENSG00000141428 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000141428 [Gene_View]  chr18:35972625-35979287 [Contig_View]  C18orf21 [Vega]
ICGC DataPortalENSG00000141428
TCGA cBioPortalC18orf21
AceView (NCBI)C18orf21
Genatlas (Paris)C18orf21
WikiGenes83608
SOURCE (Princeton)C18orf21
Genetics Home Reference (NIH)C18orf21
Genomic and cartography
GoldenPath hg38 (UCSC)C18orf21  -     chr18:35972625-35979287 +  18q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C18orf21  -     18q12.2   [Description]    (hg19-Feb_2009)
EnsemblC18orf21 - 18q12.2 [CytoView hg19]  C18orf21 - 18q12.2 [CytoView hg38]
Mapping of homologs : NCBIC18orf21 [Mapview hg19]  C18orf21 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA648431 AF277182 AF277189 AW967900 AY631401
RefSeq transcript (Entrez)NM_001201474 NM_001201475 NM_001201476 NM_031446
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C18orf21
Cluster EST : UnigeneHs.37883 [ NCBI ]
CGAP (NCI)Hs.37883
Alternative Splicing GalleryENSG00000141428
Gene ExpressionC18orf21 [ NCBI-GEO ]   C18orf21 [ EBI - ARRAY_EXPRESS ]   C18orf21 [ SEEK ]   C18orf21 [ MEM ]
Gene Expression Viewer (FireBrowse)C18orf21 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83608
GTEX Portal (Tissue expression)C18orf21
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ32NC0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ32NC0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ32NC0
Splice isoforms : SwissVarQ32NC0
PhosPhoSitePlusQ32NC0
Domains : Interpro (EBI)DUF4674   
Domain families : Pfam (Sanger)DUF4674 (PF15719)   
Domain families : Pfam (NCBI)pfam15719   
Conserved Domain (NCBI)C18orf21
DMDM Disease mutations83608
Blocks (Seattle)C18orf21
SuperfamilyQ32NC0
Human Protein AtlasENSG00000141428
Peptide AtlasQ32NC0
HPRD12688
IPIIPI00647192   IPI00845453   IPI00644777   IPI00152249   
Protein Interaction databases
DIP (DOE-UCLA)Q32NC0
IntAct (EBI)Q32NC0
FunCoupENSG00000141428
BioGRIDC18orf21
STRING (EMBL)C18orf21
ZODIACC18orf21
Ontologies - Pathways
QuickGOQ32NC0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC18orf21
Atlas of Cancer Signalling NetworkC18orf21
Wikipedia pathwaysC18orf21
Orthology - Evolution
OrthoDB83608
GeneTree (enSembl)ENSG00000141428
Phylogenetic Trees/Animal Genes : TreeFamC18orf21
HOVERGENQ32NC0
HOGENOMQ32NC0
Homologs : HomoloGeneC18orf21
Homology/Alignments : Family Browser (UCSC)C18orf21
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC18orf21 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C18orf21
dbVarC18orf21
ClinVarC18orf21
1000_GenomesC18orf21 
Exome Variant ServerC18orf21
ExAC (Exome Aggregation Consortium)C18orf21 (select the gene name)
Genetic variants : HAPMAP83608
Genomic Variants (DGV)C18orf21 [DGVbeta]
DECIPHERC18orf21 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC18orf21 
Mutations
ICGC Data PortalC18orf21 
TCGA Data PortalC18orf21 
Broad Tumor PortalC18orf21
OASIS PortalC18orf21 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC18orf21  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC18orf21
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C18orf21
DgiDB (Drug Gene Interaction Database)C18orf21
DoCM (Curated mutations)C18orf21 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C18orf21 (select a term)
intoGenC18orf21
Cancer3DC18orf21(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC18orf21
Genetic Testing Registry C18orf21
NextProtQ32NC0 [Medical]
TSGene83608
GENETestsC18orf21
Target ValidationC18orf21
Huge Navigator C18orf21 [HugePedia]
snp3D : Map Gene to Disease83608
BioCentury BCIQC18orf21
ClinGenC18orf21
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83608
Chemical/Pharm GKB GenePA134888949
Clinical trialC18orf21
Miscellaneous
canSAR (ICR)C18orf21 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC18orf21
EVEXC18orf21
GoPubMedC18orf21
iHOPC18orf21
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:56 CEST 2017

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