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C18orf25 (chromosome 18 open reading frame 25)

Identity

Alias_symbol (synonym)MGC12909
ARKL1
RNF111L1
Other alias
HGNC (Hugo) C18orf25
LocusID (NCBI) 147339
Atlas_Id 61012
Location 18q21.1  [Link to chromosome band 18q21]
Location_base_pair Starts at 46174022 and ends at 46266992 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C18orf25 (18q21.1) / FXR1 (3q26.33)C18orf25 (18q21.1) / NDRG1 (8q24.22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C18orf25   28172
Cards
Entrez_Gene (NCBI)C18orf25  147339  chromosome 18 open reading frame 25
AliasesARKL1; RNF111L1
GeneCards (Weizmann)C18orf25
Ensembl hg19 (Hinxton)ENSG00000152242 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000152242 [Gene_View]  chr18:46174022-46266992 [Contig_View]  C18orf25 [Vega]
ICGC DataPortalENSG00000152242
TCGA cBioPortalC18orf25
AceView (NCBI)C18orf25
Genatlas (Paris)C18orf25
WikiGenes147339
SOURCE (Princeton)C18orf25
Genetics Home Reference (NIH)C18orf25
Genomic and cartography
GoldenPath hg38 (UCSC)C18orf25  -     chr18:46174022-46266992 +  18q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C18orf25  -     18q21.1   [Description]    (hg19-Feb_2009)
EnsemblC18orf25 - 18q21.1 [CytoView hg19]  C18orf25 - 18q21.1 [CytoView hg38]
Mapping of homologs : NCBIC18orf25 [Mapview hg19]  C18orf25 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI374757 AK289738 AK292981 AL713661 AL832027
RefSeq transcript (Entrez)NM_001008239 NM_145055
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C18orf25
Cluster EST : UnigeneHs.116486 [ NCBI ]
CGAP (NCI)Hs.116486
Alternative Splicing GalleryENSG00000152242
Gene ExpressionC18orf25 [ NCBI-GEO ]   C18orf25 [ EBI - ARRAY_EXPRESS ]   C18orf25 [ SEEK ]   C18orf25 [ MEM ]
Gene Expression Viewer (FireBrowse)C18orf25 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)147339
GTEX Portal (Tissue expression)C18orf25
Human Protein AtlasENSG00000152242-C18orf25 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96B23   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96B23  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96B23
Splice isoforms : SwissVarQ96B23
PhosPhoSitePlusQ96B23
Domains : Interpro (EBI)RNF111_N   
Domain families : Pfam (Sanger)RNF111_N (PF15303)   
Domain families : Pfam (NCBI)pfam15303   
Conserved Domain (NCBI)C18orf25
DMDM Disease mutations147339
Blocks (Seattle)C18orf25
SuperfamilyQ96B23
Human Protein Atlas [tissue]ENSG00000152242-C18orf25 [tissue]
Peptide AtlasQ96B23
HPRD12690
IPIIPI00152407   IPI00059687   
Protein Interaction databases
DIP (DOE-UCLA)Q96B23
IntAct (EBI)Q96B23
FunCoupENSG00000152242
BioGRIDC18orf25
STRING (EMBL)C18orf25
ZODIACC18orf25
Ontologies - Pathways
QuickGOQ96B23
Ontology : AmiGOprotein polyubiquitination  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  proteasome-mediated ubiquitin-dependent protein catabolic process  ubiquitin protein ligase activity  
Ontology : EGO-EBIprotein polyubiquitination  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  proteasome-mediated ubiquitin-dependent protein catabolic process  ubiquitin protein ligase activity  
NDEx NetworkC18orf25
Atlas of Cancer Signalling NetworkC18orf25
Wikipedia pathwaysC18orf25
Orthology - Evolution
OrthoDB147339
GeneTree (enSembl)ENSG00000152242
Phylogenetic Trees/Animal Genes : TreeFamC18orf25
HOVERGENQ96B23
HOGENOMQ96B23
Homologs : HomoloGeneC18orf25
Homology/Alignments : Family Browser (UCSC)C18orf25
Gene fusions - Rearrangements
Fusion: Tumor Portal C18orf25
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC18orf25 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C18orf25
dbVarC18orf25
ClinVarC18orf25
1000_GenomesC18orf25 
Exome Variant ServerC18orf25
ExAC (Exome Aggregation Consortium)ENSG00000152242
GNOMAD BrowserENSG00000152242
Genetic variants : HAPMAP147339
Genomic Variants (DGV)C18orf25 [DGVbeta]
DECIPHERC18orf25 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC18orf25 
Mutations
ICGC Data PortalC18orf25 
TCGA Data PortalC18orf25 
Broad Tumor PortalC18orf25
OASIS PortalC18orf25 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDC18orf25
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C18orf25
DgiDB (Drug Gene Interaction Database)C18orf25
DoCM (Curated mutations)C18orf25 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C18orf25 (select a term)
intoGenC18orf25
Cancer3DC18orf25(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC18orf25
Genetic Testing Registry C18orf25
NextProtQ96B23 [Medical]
TSGene147339
GENETestsC18orf25
Target ValidationC18orf25
Huge Navigator C18orf25 [HugePedia]
snp3D : Map Gene to Disease147339
BioCentury BCIQC18orf25
ClinGenC18orf25
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD147339
Chemical/Pharm GKB GenePA134919240
Clinical trialC18orf25
Miscellaneous
canSAR (ICR)C18orf25 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC18orf25
EVEXC18orf25
GoPubMedC18orf25
iHOPC18orf25
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:39:57 CET 2017

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