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C18orf32 (chromosome 18 open reading frame 32)

Identity

Alias_symbol (synonym)FLJ23458
Other alias-
HGNC (Hugo) C18orf32
LocusID (NCBI) 497661
Atlas_Id 61013
Location 18q21.1  [Link to chromosome band 18q21]
Location_base_pair Starts at 49481178 and ends at 49487274 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C18orf32   31690
Cards
Entrez_Gene (NCBI)C18orf32  497661  chromosome 18 open reading frame 32
Aliases
GeneCards (Weizmann)C18orf32
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr18:49481178-49487274 [Contig_View]  C18orf32 [Vega]
TCGA cBioPortalC18orf32
AceView (NCBI)C18orf32
Genatlas (Paris)C18orf32
WikiGenes497661
SOURCE (Princeton)C18orf32
Genetics Home Reference (NIH)C18orf32
Genomic and cartography
GoldenPath hg38 (UCSC)C18orf32  -     chr18:49481178-49487274 -  18q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C18orf32  -     18q21.1   [Description]    (hg19-Feb_2009)
EnsemblC18orf32 - 18q21.1 [CytoView hg19]  C18orf32 - 18q21.1 [CytoView hg38]
Mapping of homologs : NCBIC18orf32 [Mapview hg19]  C18orf32 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB097012 AK027111 AK291882 BC022357 BC093004
RefSeq transcript (Entrez)NM_001035005 NM_001199346
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C18orf32
Cluster EST : UnigeneHs.603040 [ NCBI ]
CGAP (NCI)Hs.603040
Gene ExpressionC18orf32 [ NCBI-GEO ]   C18orf32 [ EBI - ARRAY_EXPRESS ]   C18orf32 [ SEEK ]   C18orf32 [ MEM ]
Gene Expression Viewer (FireBrowse)C18orf32 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)497661
GTEX Portal (Tissue expression)C18orf32
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TCD1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TCD1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TCD1
Splice isoforms : SwissVarQ8TCD1
PhosPhoSitePlusQ8TCD1
Domains : Interpro (EBI)UPF0729   
Domain families : Pfam (Sanger)DUF4512 (PF14975)   
Domain families : Pfam (NCBI)pfam14975   
Conserved Domain (NCBI)C18orf32
DMDM Disease mutations497661
Blocks (Seattle)C18orf32
SuperfamilyQ8TCD1
Peptide AtlasQ8TCD1
IPIIPI00152342   
Protein Interaction databases
DIP (DOE-UCLA)Q8TCD1
IntAct (EBI)Q8TCD1
BioGRIDC18orf32
STRING (EMBL)C18orf32
ZODIACC18orf32
Ontologies - Pathways
QuickGOQ8TCD1
Ontology : AmiGOsignal transducer activity  signal transduction  positive regulation of I-kappaB kinase/NF-kappaB signaling  
Ontology : EGO-EBIsignal transducer activity  signal transduction  positive regulation of I-kappaB kinase/NF-kappaB signaling  
NDEx NetworkC18orf32
Atlas of Cancer Signalling NetworkC18orf32
Wikipedia pathwaysC18orf32
Orthology - Evolution
OrthoDB497661
Phylogenetic Trees/Animal Genes : TreeFamC18orf32
HOVERGENQ8TCD1
HOGENOMQ8TCD1
Homologs : HomoloGeneC18orf32
Homology/Alignments : Family Browser (UCSC)C18orf32
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC18orf32 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C18orf32
dbVarC18orf32
ClinVarC18orf32
1000_GenomesC18orf32 
Exome Variant ServerC18orf32
ExAC (Exome Aggregation Consortium)C18orf32 (select the gene name)
Genetic variants : HAPMAP497661
Genomic Variants (DGV)C18orf32 [DGVbeta]
DECIPHERC18orf32 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC18orf32 
Mutations
ICGC Data PortalC18orf32 
TCGA Data PortalC18orf32 
Broad Tumor PortalC18orf32
OASIS PortalC18orf32 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC18orf32  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC18orf32
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C18orf32
DgiDB (Drug Gene Interaction Database)C18orf32
DoCM (Curated mutations)C18orf32 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C18orf32 (select a term)
intoGenC18orf32
Cancer3DC18orf32(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC18orf32
Genetic Testing Registry C18orf32
NextProtQ8TCD1 [Medical]
TSGene497661
GENETestsC18orf32
Target ValidationC18orf32
Huge Navigator C18orf32 [HugePedia]
snp3D : Map Gene to Disease497661
BioCentury BCIQC18orf32
ClinGenC18orf32
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD497661
Chemical/Pharm GKB GenePA162378602
Clinical trialC18orf32
Miscellaneous
canSAR (ICR)C18orf32 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC18orf32
EVEXC18orf32
GoPubMedC18orf32
iHOPC18orf32
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:02:56 CEST 2017

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