Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C18orf42 (chromosome 18 open reading frame 42)

Identity

Other alias-
HGNC (Hugo) C18orf42
LocusID (NCBI) 642597
Atlas_Id 61014
Location 18p11.31  [Link to chromosome band 18p11]
Location_base_pair Starts at 5143672 and ends at 5197255 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ATG4C (1p31.3) / C18orf42 (18p11.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C18orf42   28285
Cards
Entrez_Gene (NCBI)C18orf42  642597  chromosome 18 open reading frame 42
Aliases
GeneCards (Weizmann)C18orf42
Ensembl hg19 (Hinxton) [Gene_View]  chr18:5143672-5197255 [Contig_View]  C18orf42 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr18:5143672-5197255 [Contig_View]  C18orf42 [Vega]
TCGA cBioPortalC18orf42
AceView (NCBI)C18orf42
Genatlas (Paris)C18orf42
WikiGenes642597
SOURCE (Princeton)C18orf42
Genetics Home Reference (NIH)C18orf42
Genomic and cartography
GoldenPath hg19 (UCSC)C18orf42  -     chr18:5143672-5197255 -  18p11.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C18orf42  -     18p11.31   [Description]    (hg38-Dec_2013)
EnsemblC18orf42 - 18p11.31 [CytoView hg19]  C18orf42 - 18p11.31 [CytoView hg38]
Mapping of homologs : NCBIC18orf42 [Mapview hg19]  C18orf42 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001145194
RefSeq genomic (Entrez)NC_000018 NC_018929 NT_010859 NW_004929409
Consensus coding sequences : CCDS (NCBI)C18orf42
Cluster EST : UnigeneHs.437160 [ NCBI ]
CGAP (NCI)Hs.437160
Gene ExpressionC18orf42 [ NCBI-GEO ]   C18orf42 [ EBI - ARRAY_EXPRESS ]   C18orf42 [ SEEK ]   C18orf42 [ MEM ]
Gene Expression Viewer (FireBrowse)C18orf42 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)642597
GTEX Portal (Tissue expression)C18orf42
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CW23   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CW23  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CW23
Splice isoforms : SwissVarP0CW23
PhosPhoSitePlusP0CW23
Domains : Interpro (EBI)Kinase-A_anchor_RI-RII-bd_dom   
Domain families : Pfam (Sanger)AKAP7_RIRII_bdg (PF10470)   
Domain families : Pfam (NCBI)pfam10470   
Conserved Domain (NCBI)C18orf42
DMDM Disease mutations642597
Blocks (Seattle)C18orf42
SuperfamilyP0CW23
Peptide AtlasP0CW23
IPIIPI00644582   
Protein Interaction databases
DIP (DOE-UCLA)P0CW23
IntAct (EBI)P0CW23
BioGRIDC18orf42
STRING (EMBL)C18orf42
ZODIACC18orf42
Ontologies - Pathways
QuickGOP0CW23
Ontology : AmiGOprotein localization  protein kinase A binding  
Ontology : EGO-EBIprotein localization  protein kinase A binding  
NDEx NetworkC18orf42
Atlas of Cancer Signalling NetworkC18orf42
Wikipedia pathwaysC18orf42
Orthology - Evolution
OrthoDB642597
Phylogenetic Trees/Animal Genes : TreeFamC18orf42
HOVERGENP0CW23
HOGENOMP0CW23
Homologs : HomoloGeneC18orf42
Homology/Alignments : Family Browser (UCSC)C18orf42
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC18orf42 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C18orf42
dbVarC18orf42
ClinVarC18orf42
1000_GenomesC18orf42 
Exome Variant ServerC18orf42
ExAC (Exome Aggregation Consortium)C18orf42 (select the gene name)
Genetic variants : HAPMAP642597
Genomic Variants (DGV)C18orf42 [DGVbeta]
DECIPHER (Syndromes)18:5143672-5197255  
CONAN: Copy Number AnalysisC18orf42 
Mutations
ICGC Data PortalC18orf42 
TCGA Data PortalC18orf42 
Broad Tumor PortalC18orf42
OASIS PortalC18orf42 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC18orf42  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC18orf42
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C18orf42
DgiDB (Drug Gene Interaction Database)C18orf42
DoCM (Curated mutations)C18orf42 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C18orf42 (select a term)
intoGenC18orf42
Cancer3DC18orf42(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC18orf42
Genetic Testing Registry C18orf42
NextProtP0CW23 [Medical]
TSGene642597
GENETestsC18orf42
Huge Navigator C18orf42 [HugePedia]
snp3D : Map Gene to Disease642597
BioCentury BCIQC18orf42
ClinGenC18orf42
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD642597
Clinical trialC18orf42
Miscellaneous
canSAR (ICR)C18orf42 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC18orf42
EVEXC18orf42
GoPubMedC18orf42
iHOPC18orf42
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:56:47 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.