Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C18orf54 (chromosome 18 open reading frame 54)

Identity

Alias_symbol (synonym)MGC33382
LAS2
Other alias
HGNC (Hugo) C18orf54
LocusID (NCBI) 162681
Atlas_Id 56595
Location 18q21.2  [Link to chromosome band 18q21]
Location_base_pair Starts at 51884287 and ends at 51908405 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C18orf54   13796
Cards
Entrez_Gene (NCBI)C18orf54  162681  chromosome 18 open reading frame 54
AliasesLAS2
GeneCards (Weizmann)C18orf54
Ensembl hg19 (Hinxton)ENSG00000166845 [Gene_View]  chr18:51884287-51908405 [Contig_View]  C18orf54 [Vega]
Ensembl hg38 (Hinxton)ENSG00000166845 [Gene_View]  chr18:51884287-51908405 [Contig_View]  C18orf54 [Vega]
ICGC DataPortalENSG00000166845
TCGA cBioPortalC18orf54
AceView (NCBI)C18orf54
Genatlas (Paris)C18orf54
WikiGenes162681
SOURCE (Princeton)C18orf54
Genetics Home Reference (NIH)C18orf54
Genomic and cartography
GoldenPath hg19 (UCSC)C18orf54  -     chr18:51884287-51908405 +  18q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C18orf54  -     18q21.2   [Description]    (hg38-Dec_2013)
EnsemblC18orf54 - 18q21.2 [CytoView hg19]  C18orf54 - 18q21.2 [CytoView hg38]
Mapping of homologs : NCBIC18orf54 [Mapview hg19]  C18orf54 [Mapview hg38]
OMIM613258   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001288980 NM_001288981 NM_001288982 NM_173529
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C18orf54
Cluster EST : UnigeneHs.208701 [ NCBI ]
CGAP (NCI)Hs.208701
Alternative Splicing GalleryENSG00000166845
Gene ExpressionC18orf54 [ NCBI-GEO ]   C18orf54 [ EBI - ARRAY_EXPRESS ]   C18orf54 [ SEEK ]   C18orf54 [ MEM ]
Gene Expression Viewer (FireBrowse)C18orf54 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)162681
GTEX Portal (Tissue expression)C18orf54
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C18orf54
DMDM Disease mutations162681
Blocks (Seattle)C18orf54
Human Protein AtlasENSG00000166845
HPRD11334
IPIIPI00217756   IPI00445152   
Protein Interaction databases
FunCoupENSG00000166845
BioGRIDC18orf54
STRING (EMBL)C18orf54
ZODIACC18orf54
Ontologies - Pathways
Huge Navigator C18orf54 [HugePedia]
snp3D : Map Gene to Disease162681
BioCentury BCIQC18orf54
ClinGenC18orf54
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD162681
Chemical/Pharm GKB GenePA134942612
Clinical trialC18orf54
Miscellaneous
canSAR (ICR)C18orf54 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC18orf54
EVEXC18orf54
GoPubMedC18orf54
iHOPC18orf54
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:58:03 CET 2017

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