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C18orf54 (chromosome 18 open reading frame 54)

Identity

Alias_symbol (synonym)MGC33382
LAS2
Other alias
HGNC (Hugo) C18orf54
LocusID (NCBI) 162681
Atlas_Id 56595
Location 18q21.2  [Link to chromosome band 18q21]
Location_base_pair Starts at 54357917 and ends at 54382035 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C18orf54   13796
Cards
Entrez_Gene (NCBI)C18orf54  162681  chromosome 18 open reading frame 54
AliasesLAS2
GeneCards (Weizmann)C18orf54
Ensembl hg19 (Hinxton)ENSG00000166845 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166845 [Gene_View]  chr18:54357917-54382035 [Contig_View]  C18orf54 [Vega]
ICGC DataPortalENSG00000166845
TCGA cBioPortalC18orf54
AceView (NCBI)C18orf54
Genatlas (Paris)C18orf54
WikiGenes162681
SOURCE (Princeton)C18orf54
Genetics Home Reference (NIH)C18orf54
Genomic and cartography
GoldenPath hg38 (UCSC)C18orf54  -     chr18:54357917-54382035 +  18q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C18orf54  -     18q21.2   [Description]    (hg19-Feb_2009)
EnsemblC18orf54 - 18q21.2 [CytoView hg19]  C18orf54 - 18q21.2 [CytoView hg38]
Mapping of homologs : NCBIC18orf54 [Mapview hg19]  C18orf54 [Mapview hg38]
OMIM613258   
Gene and transcription
Genbank (Entrez)AB267906 AB330143 AB330144 AB353076 AB353077
RefSeq transcript (Entrez)NM_001288980 NM_001288981 NM_001288982 NM_173529
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C18orf54
Cluster EST : UnigeneHs.208701 [ NCBI ]
CGAP (NCI)Hs.208701
Alternative Splicing GalleryENSG00000166845
Gene ExpressionC18orf54 [ NCBI-GEO ]   C18orf54 [ EBI - ARRAY_EXPRESS ]   C18orf54 [ SEEK ]   C18orf54 [ MEM ]
Gene Expression Viewer (FireBrowse)C18orf54 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)162681
GTEX Portal (Tissue expression)C18orf54
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IYD9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IYD9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IYD9
Splice isoforms : SwissVarQ8IYD9
PhosPhoSitePlusQ8IYD9
Domains : Interpro (EBI)LAS2   
Domain families : Pfam (Sanger)LAS2 (PF15792)   
Domain families : Pfam (NCBI)pfam15792   
Conserved Domain (NCBI)C18orf54
DMDM Disease mutations162681
Blocks (Seattle)C18orf54
SuperfamilyQ8IYD9
Human Protein AtlasENSG00000166845
Peptide AtlasQ8IYD9
HPRD11334
IPIIPI00217756   IPI00445152   
Protein Interaction databases
DIP (DOE-UCLA)Q8IYD9
IntAct (EBI)Q8IYD9
FunCoupENSG00000166845
BioGRIDC18orf54
STRING (EMBL)C18orf54
ZODIACC18orf54
Ontologies - Pathways
QuickGOQ8IYD9
Ontology : AmiGOextracellular region  negative regulation of cell proliferation  
Ontology : EGO-EBIextracellular region  negative regulation of cell proliferation  
NDEx NetworkC18orf54
Atlas of Cancer Signalling NetworkC18orf54
Wikipedia pathwaysC18orf54
Orthology - Evolution
OrthoDB162681
GeneTree (enSembl)ENSG00000166845
Phylogenetic Trees/Animal Genes : TreeFamC18orf54
HOVERGENQ8IYD9
HOGENOMQ8IYD9
Homologs : HomoloGeneC18orf54
Homology/Alignments : Family Browser (UCSC)C18orf54
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC18orf54 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C18orf54
dbVarC18orf54
ClinVarC18orf54
1000_GenomesC18orf54 
Exome Variant ServerC18orf54
ExAC (Exome Aggregation Consortium)C18orf54 (select the gene name)
Genetic variants : HAPMAP162681
Genomic Variants (DGV)C18orf54 [DGVbeta]
DECIPHERC18orf54 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC18orf54 
Mutations
ICGC Data PortalC18orf54 
TCGA Data PortalC18orf54 
Broad Tumor PortalC18orf54
OASIS PortalC18orf54 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC18orf54  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC18orf54
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C18orf54
DgiDB (Drug Gene Interaction Database)C18orf54
DoCM (Curated mutations)C18orf54 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C18orf54 (select a term)
intoGenC18orf54
Cancer3DC18orf54(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613258   
Orphanet
MedgenC18orf54
Genetic Testing Registry C18orf54
NextProtQ8IYD9 [Medical]
TSGene162681
GENETestsC18orf54
Huge Navigator C18orf54 [HugePedia]
snp3D : Map Gene to Disease162681
BioCentury BCIQC18orf54
ClinGenC18orf54
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD162681
Chemical/Pharm GKB GenePA134942612
Clinical trialC18orf54
Miscellaneous
canSAR (ICR)C18orf54 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC18orf54
EVEXC18orf54
GoPubMedC18orf54
iHOPC18orf54
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:08:15 CEST 2017

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