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C18orf8 (chromosome 18 open reading frame 8)

Identity

Alias_symbol (synonym)MIC1
MIC-1
HsT2591
Other aliasMic-1
HGNC (Hugo) C18orf8
LocusID (NCBI) 29919
Atlas_Id 867
Location 18q11.2  [Link to chromosome band 18q11]
Location_base_pair Starts at 21083434 and ends at 21111771 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
BCL2 (18q21.33) / C18orf8 (18q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C18orf8   24326
Cards
Entrez_Gene (NCBI)C18orf8  29919  chromosome 18 open reading frame 8
AliasesHsT2591; MIC1; Mic-1
GeneCards (Weizmann)C18orf8
Ensembl hg19 (Hinxton)ENSG00000141452 [Gene_View]  chr18:21083434-21111771 [Contig_View]  C18orf8 [Vega]
Ensembl hg38 (Hinxton)ENSG00000141452 [Gene_View]  chr18:21083434-21111771 [Contig_View]  C18orf8 [Vega]
ICGC DataPortalENSG00000141452
TCGA cBioPortalC18orf8
AceView (NCBI)C18orf8
Genatlas (Paris)C18orf8
WikiGenes29919
SOURCE (Princeton)C18orf8
Genetics Home Reference (NIH)C18orf8
Genomic and cartography
GoldenPath hg19 (UCSC)C18orf8  -     chr18:21083434-21111771 +  18q11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C18orf8  -     18q11.2   [Description]    (hg38-Dec_2013)
EnsemblC18orf8 - 18q11.2 [CytoView hg19]  C18orf8 - 18q11.2 [CytoView hg38]
Mapping of homologs : NCBIC18orf8 [Mapview hg19]  C18orf8 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF143536 AK027106 AK057192 AK294169 AK295246
RefSeq transcript (Entrez)NM_001276342 NM_001318707 NM_001318708 NM_001318709 NM_013326
RefSeq genomic (Entrez)NC_000018 NC_018929 NG_033119 NT_010966 NW_004929410
Consensus coding sequences : CCDS (NCBI)C18orf8
Cluster EST : UnigeneHs.464779 [ NCBI ]
CGAP (NCI)Hs.464779
Alternative Splicing GalleryENSG00000141452
Gene ExpressionC18orf8 [ NCBI-GEO ]   C18orf8 [ EBI - ARRAY_EXPRESS ]   C18orf8 [ SEEK ]   C18orf8 [ MEM ]
Gene Expression Viewer (FireBrowse)C18orf8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29919
GTEX Portal (Tissue expression)C18orf8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96DM3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96DM3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96DM3
Splice isoforms : SwissVarQ96DM3
PhosPhoSitePlusQ96DM3
Domains : Interpro (EBI)Mic1    WD40/YVTN_repeat-like_dom    WD40_repeat_dom   
Domain families : Pfam (Sanger)Mic1 (PF07035)   
Domain families : Pfam (NCBI)pfam07035   
Conserved Domain (NCBI)C18orf8
DMDM Disease mutations29919
Blocks (Seattle)C18orf8
SuperfamilyQ96DM3
Human Protein AtlasENSG00000141452
Peptide AtlasQ96DM3
HPRD12693
IPIIPI00149964   IPI00647260   IPI01011311   IPI00643380   
Protein Interaction databases
DIP (DOE-UCLA)Q96DM3
IntAct (EBI)Q96DM3
FunCoupENSG00000141452
BioGRIDC18orf8
STRING (EMBL)C18orf8
ZODIACC18orf8
Ontologies - Pathways
QuickGOQ96DM3
Ontology : AmiGOlysosomal membrane  
Ontology : EGO-EBIlysosomal membrane  
NDEx NetworkC18orf8
Atlas of Cancer Signalling NetworkC18orf8
Wikipedia pathwaysC18orf8
Orthology - Evolution
OrthoDB29919
GeneTree (enSembl)ENSG00000141452
Phylogenetic Trees/Animal Genes : TreeFamC18orf8
HOVERGENQ96DM3
HOGENOMQ96DM3
Homologs : HomoloGeneC18orf8
Homology/Alignments : Family Browser (UCSC)C18orf8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC18orf8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C18orf8
dbVarC18orf8
ClinVarC18orf8
1000_GenomesC18orf8 
Exome Variant ServerC18orf8
ExAC (Exome Aggregation Consortium)C18orf8 (select the gene name)
Genetic variants : HAPMAP29919
Genomic Variants (DGV)C18orf8 [DGVbeta]
DECIPHER (Syndromes)18:21083434-21111771  ENSG00000141452
CONAN: Copy Number AnalysisC18orf8 
Mutations
ICGC Data PortalC18orf8 
TCGA Data PortalC18orf8 
Broad Tumor PortalC18orf8
OASIS PortalC18orf8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC18orf8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC18orf8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C18orf8
DgiDB (Drug Gene Interaction Database)C18orf8
DoCM (Curated mutations)C18orf8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C18orf8 (select a term)
intoGenC18orf8
Cancer3DC18orf8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC18orf8
Genetic Testing Registry C18orf8
NextProtQ96DM3 [Medical]
TSGene29919
GENETestsC18orf8
Huge Navigator C18orf8 [HugePedia]
snp3D : Map Gene to Disease29919
BioCentury BCIQC18orf8
ClinGenC18orf8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29919
Chemical/Pharm GKB GenePA134862561
Clinical trialC18orf8
Miscellaneous
canSAR (ICR)C18orf8 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC18orf8
EVEXC18orf8
GoPubMedC18orf8
iHOPC18orf8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:54:27 CEST 2017

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