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C19orf18 (chromosome 19 open reading frame 18)

Identity

Alias_symbol (synonym)MGC41906
Other alias-
HGNC (Hugo) C19orf18
LocusID (NCBI) 147685
Atlas_Id 61022
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 58469805 and ends at 58485902 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ZNF606 (19q13.43) / C19orf18 (19q13.43)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C19orf18   28642
Cards
Entrez_Gene (NCBI)C19orf18  147685  chromosome 19 open reading frame 18
Aliases
GeneCards (Weizmann)C19orf18
Ensembl hg19 (Hinxton)ENSG00000177025 [Gene_View]  chr19:58469805-58485902 [Contig_View]  C19orf18 [Vega]
Ensembl hg38 (Hinxton)ENSG00000177025 [Gene_View]  chr19:58469805-58485902 [Contig_View]  C19orf18 [Vega]
ICGC DataPortalENSG00000177025
TCGA cBioPortalC19orf18
AceView (NCBI)C19orf18
Genatlas (Paris)C19orf18
WikiGenes147685
SOURCE (Princeton)C19orf18
Genetics Home Reference (NIH)C19orf18
Genomic and cartography
GoldenPath hg19 (UCSC)C19orf18  -     chr19:58469805-58485902 -  19q13.43   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C19orf18  -     19q13.43   [Description]    (hg38-Dec_2013)
EnsemblC19orf18 - 19q13.43 [CytoView hg19]  C19orf18 - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIC19orf18 [Mapview hg19]  C19orf18 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC033933
RefSeq transcript (Entrez)NM_152474
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)C19orf18
Cluster EST : UnigeneHs.134209 [ NCBI ]
CGAP (NCI)Hs.134209
Alternative Splicing GalleryENSG00000177025
Gene ExpressionC19orf18 [ NCBI-GEO ]   C19orf18 [ EBI - ARRAY_EXPRESS ]   C19orf18 [ SEEK ]   C19orf18 [ MEM ]
Gene Expression Viewer (FireBrowse)C19orf18 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)147685
GTEX Portal (Tissue expression)C19orf18
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NEA5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NEA5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NEA5
Splice isoforms : SwissVarQ8NEA5
PhosPhoSitePlusQ8NEA5
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C19orf18
DMDM Disease mutations147685
Blocks (Seattle)C19orf18
SuperfamilyQ8NEA5
Human Protein AtlasENSG00000177025
Peptide AtlasQ8NEA5
HPRD12699
IPIIPI00168640   
Protein Interaction databases
DIP (DOE-UCLA)Q8NEA5
IntAct (EBI)Q8NEA5
FunCoupENSG00000177025
BioGRIDC19orf18
STRING (EMBL)C19orf18
ZODIACC19orf18
Ontologies - Pathways
QuickGOQ8NEA5
Ontology : AmiGOmolecular_function  biological_process  integral component of membrane  extracellular exosome  
Ontology : EGO-EBImolecular_function  biological_process  integral component of membrane  extracellular exosome  
NDEx NetworkC19orf18
Atlas of Cancer Signalling NetworkC19orf18
Wikipedia pathwaysC19orf18
Orthology - Evolution
OrthoDB147685
GeneTree (enSembl)ENSG00000177025
Phylogenetic Trees/Animal Genes : TreeFamC19orf18
HOVERGENQ8NEA5
HOGENOMQ8NEA5
Homologs : HomoloGeneC19orf18
Homology/Alignments : Family Browser (UCSC)C19orf18
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC19orf18 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C19orf18
dbVarC19orf18
ClinVarC19orf18
1000_GenomesC19orf18 
Exome Variant ServerC19orf18
ExAC (Exome Aggregation Consortium)C19orf18 (select the gene name)
Genetic variants : HAPMAP147685
Genomic Variants (DGV)C19orf18 [DGVbeta]
DECIPHER (Syndromes)19:58469805-58485902  ENSG00000177025
CONAN: Copy Number AnalysisC19orf18 
Mutations
ICGC Data PortalC19orf18 
TCGA Data PortalC19orf18 
Broad Tumor PortalC19orf18
OASIS PortalC19orf18 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC19orf18  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC19orf18
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C19orf18
DgiDB (Drug Gene Interaction Database)C19orf18
DoCM (Curated mutations)C19orf18 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C19orf18 (select a term)
intoGenC19orf18
Cancer3DC19orf18(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC19orf18
Genetic Testing Registry C19orf18
NextProtQ8NEA5 [Medical]
TSGene147685
GENETestsC19orf18
Huge Navigator C19orf18 [HugePedia]
snp3D : Map Gene to Disease147685
BioCentury BCIQC19orf18
ClinGenC19orf18
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD147685
Chemical/Pharm GKB GenePA134876425
Clinical trialC19orf18
Miscellaneous
canSAR (ICR)C19orf18 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC19orf18
EVEXC19orf18
GoPubMedC19orf18
iHOPC19orf18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:56:48 CET 2017

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