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C19orf24 (chromosome 19 open reading frame 24)

Identity

Alias_symbol (synonym)FLJ20640
Other alias-
HGNC (Hugo) C19orf24
LocusID (NCBI) 55009
Atlas_Id 61023
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 1275521 and ends at 1279244 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CIRBP (19p13.3) / C19orf24 (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C19orf24   26073
Cards
Entrez_Gene (NCBI)C19orf24  55009  chromosome 19 open reading frame 24
Aliases
GeneCards (Weizmann)C19orf24
Ensembl hg19 (Hinxton)ENSG00000228300 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000228300 [Gene_View]  chr19:1275521-1279244 [Contig_View]  C19orf24 [Vega]
ICGC DataPortalENSG00000228300
TCGA cBioPortalC19orf24
AceView (NCBI)C19orf24
Genatlas (Paris)C19orf24
WikiGenes55009
SOURCE (Princeton)C19orf24
Genetics Home Reference (NIH)C19orf24
Genomic and cartography
GoldenPath hg38 (UCSC)C19orf24  -     chr19:1275521-1279244 +  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C19orf24  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblC19orf24 - 19p13.3 [CytoView hg19]  C19orf24 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIC19orf24 [Mapview hg19]  C19orf24 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000647 AK096105 AK225502 BC000890 BC012080
RefSeq transcript (Entrez)NM_017914
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C19orf24
Cluster EST : UnigeneHs.591383 [ NCBI ]
CGAP (NCI)Hs.591383
Alternative Splicing GalleryENSG00000228300
Gene ExpressionC19orf24 [ NCBI-GEO ]   C19orf24 [ EBI - ARRAY_EXPRESS ]   C19orf24 [ SEEK ]   C19orf24 [ MEM ]
Gene Expression Viewer (FireBrowse)C19orf24 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55009
GTEX Portal (Tissue expression)C19orf24
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BVV8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BVV8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BVV8
Splice isoforms : SwissVarQ9BVV8
PhosPhoSitePlusQ9BVV8
Domains : Interpro (EBI)DUF1180   
Domain families : Pfam (Sanger)DUF1180 (PF06679)   
Domain families : Pfam (NCBI)pfam06679   
Conserved Domain (NCBI)C19orf24
DMDM Disease mutations55009
Blocks (Seattle)C19orf24
SuperfamilyQ9BVV8
Human Protein AtlasENSG00000228300
Peptide AtlasQ9BVV8
HPRD12702
IPIIPI00306440   IPI00956464   
Protein Interaction databases
DIP (DOE-UCLA)Q9BVV8
IntAct (EBI)Q9BVV8
FunCoupENSG00000228300
BioGRIDC19orf24
STRING (EMBL)C19orf24
ZODIACC19orf24
Ontologies - Pathways
QuickGOQ9BVV8
Ontology : AmiGOextracellular region  cytoplasm  integral component of membrane  
Ontology : EGO-EBIextracellular region  cytoplasm  integral component of membrane  
NDEx NetworkC19orf24
Atlas of Cancer Signalling NetworkC19orf24
Wikipedia pathwaysC19orf24
Orthology - Evolution
OrthoDB55009
GeneTree (enSembl)ENSG00000228300
Phylogenetic Trees/Animal Genes : TreeFamC19orf24
HOVERGENQ9BVV8
HOGENOMQ9BVV8
Homologs : HomoloGeneC19orf24
Homology/Alignments : Family Browser (UCSC)C19orf24
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC19orf24 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C19orf24
dbVarC19orf24
ClinVarC19orf24
1000_GenomesC19orf24 
Exome Variant ServerC19orf24
ExAC (Exome Aggregation Consortium)C19orf24 (select the gene name)
Genetic variants : HAPMAP55009
Genomic Variants (DGV)C19orf24 [DGVbeta]
DECIPHERC19orf24 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC19orf24 
Mutations
ICGC Data PortalC19orf24 
TCGA Data PortalC19orf24 
Broad Tumor PortalC19orf24
OASIS PortalC19orf24 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC19orf24  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC19orf24
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C19orf24
DgiDB (Drug Gene Interaction Database)C19orf24
DoCM (Curated mutations)C19orf24 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C19orf24 (select a term)
intoGenC19orf24
Cancer3DC19orf24(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC19orf24
Genetic Testing Registry C19orf24
NextProtQ9BVV8 [Medical]
TSGene55009
GENETestsC19orf24
Target ValidationC19orf24
Huge Navigator C19orf24 [HugePedia]
snp3D : Map Gene to Disease55009
BioCentury BCIQC19orf24
ClinGenC19orf24
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55009
Chemical/Pharm GKB GenePA134930220
Clinical trialC19orf24
Miscellaneous
canSAR (ICR)C19orf24 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC19orf24
EVEXC19orf24
GoPubMedC19orf24
iHOPC19orf24
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:40:40 CEST 2017

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