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C19orf25 (chromosome 19 open reading frame 25)

Identity

Alias_symbol (synonym)FLJ36666
Other alias-
HGNC (Hugo) C19orf25
LocusID (NCBI) 148223
Atlas_Id 54072
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 1473201 and ends at 1479229 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C19orf25 (19p13.3) / APC2 (19p13.3)C19orf25 (19p13.3) / KLF2 (19p13.11)C19orf25 (19p13.3) / MED1 (17q12)
C19orf25 (19p13.3) / NDUFS7 (19p13.3)C19orf25 (19p13.3) / SLC25A23 (19p13.3)C19orf25 19p13.3 / MED1 17q12

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C19orf25   26711
Cards
Entrez_Gene (NCBI)C19orf25  148223  chromosome 19 open reading frame 25
Aliases
GeneCards (Weizmann)C19orf25
Ensembl hg19 (Hinxton)ENSG00000119559 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000119559 [Gene_View]  chr19:1473201-1479229 [Contig_View]  C19orf25 [Vega]
ICGC DataPortalENSG00000119559
TCGA cBioPortalC19orf25
AceView (NCBI)C19orf25
Genatlas (Paris)C19orf25
WikiGenes148223
SOURCE (Princeton)C19orf25
Genetics Home Reference (NIH)C19orf25
Genomic and cartography
GoldenPath hg38 (UCSC)C19orf25  -     chr19:1473201-1479229 -  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C19orf25  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblC19orf25 - 19p13.3 [CytoView hg19]  C19orf25 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIC19orf25 [Mapview hg19]  C19orf25 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056004 AK075267 AK093985 AK297944 AL122089
RefSeq transcript (Entrez)NM_152482
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C19orf25
Cluster EST : UnigeneHs.700773 [ NCBI ]
CGAP (NCI)Hs.700773
Alternative Splicing GalleryENSG00000119559
Gene ExpressionC19orf25 [ NCBI-GEO ]   C19orf25 [ EBI - ARRAY_EXPRESS ]   C19orf25 [ SEEK ]   C19orf25 [ MEM ]
Gene Expression Viewer (FireBrowse)C19orf25 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)148223
GTEX Portal (Tissue expression)C19orf25
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UFG5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UFG5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UFG5
Splice isoforms : SwissVarQ9UFG5
PhosPhoSitePlusQ9UFG5
Domains : Interpro (EBI)UPF0449   
Domain families : Pfam (Sanger)UPF0449 (PF15136)   
Domain families : Pfam (NCBI)pfam15136   
Conserved Domain (NCBI)C19orf25
DMDM Disease mutations148223
Blocks (Seattle)C19orf25
SuperfamilyQ9UFG5
Human Protein AtlasENSG00000119559
Peptide AtlasQ9UFG5
HPRD12703
IPIIPI00298662   IPI00789616   IPI00910213   
Protein Interaction databases
DIP (DOE-UCLA)Q9UFG5
IntAct (EBI)Q9UFG5
FunCoupENSG00000119559
BioGRIDC19orf25
STRING (EMBL)C19orf25
ZODIACC19orf25
Ontologies - Pathways
QuickGOQ9UFG5
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkC19orf25
Atlas of Cancer Signalling NetworkC19orf25
Wikipedia pathwaysC19orf25
Orthology - Evolution
OrthoDB148223
GeneTree (enSembl)ENSG00000119559
Phylogenetic Trees/Animal Genes : TreeFamC19orf25
HOVERGENQ9UFG5
HOGENOMQ9UFG5
Homologs : HomoloGeneC19orf25
Homology/Alignments : Family Browser (UCSC)C19orf25
Gene fusions - Rearrangements
Fusion : MitelmanC19orf25/APC2 [19p13.3/19p13.3]  
Fusion : MitelmanC19orf25/MED1 [19p13.3/17q12]  [t(17;19)(q12;p13)]  
Fusion: TCGAC19orf25 19p13.3 MED1 17q12 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC19orf25 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C19orf25
dbVarC19orf25
ClinVarC19orf25
1000_GenomesC19orf25 
Exome Variant ServerC19orf25
ExAC (Exome Aggregation Consortium)C19orf25 (select the gene name)
Genetic variants : HAPMAP148223
Genomic Variants (DGV)C19orf25 [DGVbeta]
DECIPHERC19orf25 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC19orf25 
Mutations
ICGC Data PortalC19orf25 
TCGA Data PortalC19orf25 
Broad Tumor PortalC19orf25
OASIS PortalC19orf25 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC19orf25  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC19orf25
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C19orf25
DgiDB (Drug Gene Interaction Database)C19orf25
DoCM (Curated mutations)C19orf25 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C19orf25 (select a term)
intoGenC19orf25
Cancer3DC19orf25(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC19orf25
Genetic Testing Registry C19orf25
NextProtQ9UFG5 [Medical]
TSGene148223
GENETestsC19orf25
Target ValidationC19orf25
Huge Navigator C19orf25 [HugePedia]
snp3D : Map Gene to Disease148223
BioCentury BCIQC19orf25
ClinGenC19orf25
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD148223
Chemical/Pharm GKB GenePA134878893
Clinical trialC19orf25
Miscellaneous
canSAR (ICR)C19orf25 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC19orf25
EVEXC19orf25
GoPubMedC19orf25
iHOPC19orf25
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 18:59:48 CEST 2017

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