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C19orf33 (chromosome 19 open reading frame 33)

Identity

Other namesH2RSP
IMUP
IMUP-1
IMUP-2
HGNC (Hugo) C19orf33
LocusID (NCBI) 64073
Location 19q13.2
Location_base_pair Starts at 38794804 and ends at 38795646 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)C19orf33   16668
Cards
Entrez_Gene (NCBI)C19orf33  64073  chromosome 19 open reading frame 33
GeneCards (Weizmann)C19orf33
Ensembl hg19 (Hinxton)ENSG00000167644 [Gene_View]  chr19:38794804-38795646 [Contig_View]  C19orf33 [Vega]
Ensembl hg38 (Hinxton)ENSG00000167644 [Gene_View]  chr19:38794804-38795646 [Contig_View]  C19orf33 [Vega]
ICGC DataPortalENSG00000167644
cBioPortalC19orf33
AceView (NCBI)C19orf33
Genatlas (Paris)C19orf33
WikiGenes64073
SOURCE (Princeton)C19orf33
Genomic and cartography
GoldenPath hg19 (UCSC)C19orf33  -     chr19:38794804-38795646 +  19q13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C19orf33  -     19q13.2   [Description]    (hg38-Dec_2013)
EnsemblC19orf33 - 19q13.2 [CytoView hg19]  C19orf33 - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBIC19orf33 [Mapview hg19]  C19orf33 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB038317 AB038318 AF213678 BC008888 BC014264
RefSeq transcript (Entrez)NM_033520
RefSeq genomic (Entrez)AC_000151 NC_000019 NC_018930 NT_011109 NW_001838496 NW_004929415
Consensus coding sequences : CCDS (NCBI)C19orf33
Cluster EST : UnigeneHs.631544 [ NCBI ]
CGAP (NCI)Hs.631544
Alternative Splicing : Fast-db (Paris)GSHG0014887
Alternative Splicing GalleryENSG00000167644
Gene ExpressionC19orf33 [ NCBI-GEO ]     C19orf33 [ SEEK ]   C19orf33 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9GZP8 (Uniprot)
NextProtQ9GZP8  [Medical]
With graphics : InterProQ9GZP8
Splice isoforms : SwissVarQ9GZP8 (Swissvar)
Domains : Interpro (EBI)IMUP   
Related proteins : CluSTrQ9GZP8
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
DMDM Disease mutations64073
Blocks (Seattle)Q9GZP8
Human Protein AtlasENSG00000167644
Peptide AtlasQ9GZP8
HPRD12706
IPIIPI00030767   IPI00337392   
Protein Interaction databases
DIP (DOE-UCLA)Q9GZP8
IntAct (EBI)Q9GZP8
FunCoupENSG00000167644
BioGRIDC19orf33
IntegromeDBC19orf33
STRING (EMBL)C19orf33
Ontologies - Pathways
QuickGOQ9GZP8
Ontology : AmiGOdouble-stranded DNA binding  single-stranded DNA binding  nucleus  biological_process  
Ontology : EGO-EBIdouble-stranded DNA binding  single-stranded DNA binding  nucleus  biological_process  
Protein Interaction DatabaseC19orf33
DoCM (Curated mutations)C19orf33
Wikipedia pathwaysC19orf33
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerC19orf33 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C19orf33
dbVarC19orf33
ClinVarC19orf33
1000_GenomesC19orf33 
Exome Variant ServerC19orf33
SNP (GeneSNP Utah)C19orf33
SNP : HGBaseC19orf33
Genetic variants : HAPMAPC19orf33
Genomic VariantsC19orf33  C19orf33 [DGVbeta]
Mutations
ICGC Data PortalENSG00000167644 
Somatic Mutations in Cancer : COSMICC19orf33 
CONAN: Copy Number AnalysisC19orf33 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)19:38794804-38795646
Mutations and Diseases : HGMDC19orf33
OMIM
MedgenC19orf33
NextProtQ9GZP8 [Medical]
GENETestsC19orf33
Disease Genetic AssociationC19orf33
Huge Navigator C19orf33 [HugePedia]  C19orf33 [HugeCancerGEM]
snp3D : Map Gene to Disease64073
DGIdb (Drug Gene Interaction db)C19orf33
General knowledge
Homologs : HomoloGeneC19orf33
Homology/Alignments : Family Browser (UCSC)C19orf33
Phylogenetic Trees/Animal Genes : TreeFamC19orf33
Chemical/Protein Interactions : CTD64073
Chemical/Pharm GKB GenePA134924870
Clinical trialC19orf33
Cancer Resource (Charite)ENSG00000167644
Other databases
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
CoreMineC19orf33
GoPubMedC19orf33
iHOPC19orf33
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 20 20:28:37 CET 2014

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