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C19orf33 (chromosome 19 open reading frame 33)

Identity

Other namesH2RSP
IMUP
IMUP-1
IMUP-2
HGNC (Hugo) C19orf33
LocusID (NCBI) 64073
Atlas_Id 868
Location 19q13.2
Location_base_pair Starts at 38794804 and ends at 38795646 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C19orf33   16668
Cards
Entrez_Gene (NCBI)C19orf33  64073  chromosome 19 open reading frame 33
GeneCards (Weizmann)C19orf33
Ensembl hg19 (Hinxton)ENSG00000167644 [Gene_View]  chr19:38794804-38795646 [Contig_View]  C19orf33 [Vega]
Ensembl hg38 (Hinxton)ENSG00000167644 [Gene_View]  chr19:38794804-38795646 [Contig_View]  C19orf33 [Vega]
ICGC DataPortalENSG00000167644
TCGA cBioPortalC19orf33
AceView (NCBI)C19orf33
Genatlas (Paris)C19orf33
WikiGenes64073
SOURCE (Princeton)C19orf33
Genomic and cartography
GoldenPath hg19 (UCSC)C19orf33  -     chr19:38794804-38795646 +  19q13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C19orf33  -     19q13.2   [Description]    (hg38-Dec_2013)
EnsemblC19orf33 - 19q13.2 [CytoView hg19]  C19orf33 - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBIC19orf33 [Mapview hg19]  C19orf33 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB038317 AB038318 AF213678 BC008888 BC014264
RefSeq transcript (Entrez)NM_001317801 NM_022125 NM_033520
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)C19orf33
Cluster EST : UnigeneHs.631544 [ NCBI ]
CGAP (NCI)Hs.631544
Alternative Splicing : Fast-db (Paris)GSHG0014887
Alternative Splicing GalleryENSG00000167644
Gene ExpressionC19orf33 [ NCBI-GEO ]     C19orf33 [ SEEK ]   C19orf33 [ MEM ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)64073
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9GZP8 (Uniprot)
NextProtQ9GZP8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9GZP8
Splice isoforms : SwissVarQ9GZP8 (Swissvar)
PhosPhoSitePlusQ9GZP8
Domains : Interpro (EBI)IMUP   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
DMDM Disease mutations64073
Blocks (Seattle)C19orf33
Human Protein AtlasENSG00000167644
Peptide AtlasQ9GZP8
HPRD12706
IPIIPI00030767   IPI00337392   
Protein Interaction databases
DIP (DOE-UCLA)Q9GZP8
IntAct (EBI)Q9GZP8
FunCoupENSG00000167644
BioGRIDC19orf33
IntegromeDBC19orf33
STRING (EMBL)C19orf33
ZODIACC19orf33
Ontologies - Pathways
QuickGOQ9GZP8
Ontology : AmiGOdouble-stranded DNA binding  single-stranded DNA binding  nucleus  biological_process  
Ontology : EGO-EBIdouble-stranded DNA binding  single-stranded DNA binding  nucleus  biological_process  
Protein Interaction DatabaseC19orf33
Atlas of Cancer Signalling NetworkC19orf33
Wikipedia pathwaysC19orf33
Orthology - Evolution
OrthoDB64073
GeneTree (enSembl)ENSG00000167644
Phylogenetic Trees/Animal Genes : TreeFamC19orf33
Homologs : HomoloGeneC19orf33
Homology/Alignments : Family Browser (UCSC)C19orf33
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerC19orf33 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C19orf33
dbVarC19orf33
ClinVarC19orf33
1000_GenomesC19orf33 
Exome Variant ServerC19orf33
Exome Aggregation Consortium (ExAC)ENSG00000167644
SNP (GeneSNP Utah)C19orf33
SNP : HGBaseC19orf33
Genetic variants : HAPMAPC19orf33
Genomic Variants (DGV)C19orf33 [DGVbeta]
Mutations
ICGC Data PortalC19orf33 
TCGA Data PortalC19orf33 
Tumor PortalC19orf33
TCGA Copy Number PortalC19orf33
Somatic Mutations in Cancer : COSMICC19orf33 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C19orf33
DgiDB (Drug Gene Interaction Database)C19orf33
DoCM (Curated mutations)C19orf33 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C19orf33 (select a term)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)19:38794804-38795646
CONAN: Copy Number AnalysisC19orf33 
Mutations and Diseases : HGMDC19orf33
OMIM
MedgenC19orf33
NextProtQ9GZP8 [Medical]
TSGene64073
GENETestsC19orf33
Huge Navigator C19orf33 [HugePedia]  C19orf33 [HugeCancerGEM]
snp3D : Map Gene to Disease64073
BioCentury BCIQC19orf33
General knowledge
Chemical/Protein Interactions : CTD64073
Chemical/Pharm GKB GenePA134924870
Clinical trialC19orf33
Other databases
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC19orf33
GoPubMedC19orf33
iHOPC19orf33
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Jan 16 18:14:36 CET 2016

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