Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C19orf35 (chromosome 19 open reading frame 35)

Identity

Alias_symbol (synonym)FLJ45778
Other alias-
HGNC (Hugo) C19orf35
LocusID (NCBI) 374872
Atlas_Id 61024
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 2274632 and ends at 2282182 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C19orf35   24793
Cards
Entrez_Gene (NCBI)C19orf35  374872  chromosome 19 open reading frame 35
Aliases
GeneCards (Weizmann)C19orf35
Ensembl hg19 (Hinxton)ENSG00000188305 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188305 [Gene_View]  chr19:2274632-2282182 [Contig_View]  C19orf35 [Vega]
ICGC DataPortalENSG00000188305
TCGA cBioPortalC19orf35
AceView (NCBI)C19orf35
Genatlas (Paris)C19orf35
WikiGenes374872
SOURCE (Princeton)C19orf35
Genetics Home Reference (NIH)C19orf35
Genomic and cartography
GoldenPath hg38 (UCSC)C19orf35  -     chr19:2274632-2282182 -  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C19orf35  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblC19orf35 - 19p13.3 [CytoView hg19]  C19orf35 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIC19orf35 [Mapview hg19]  C19orf35 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK127680 BC107678
RefSeq transcript (Entrez)NM_198532
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C19orf35
Cluster EST : UnigeneHs.511803 [ NCBI ]
CGAP (NCI)Hs.511803
Alternative Splicing GalleryENSG00000188305
Gene ExpressionC19orf35 [ NCBI-GEO ]   C19orf35 [ EBI - ARRAY_EXPRESS ]   C19orf35 [ SEEK ]   C19orf35 [ MEM ]
Gene Expression Viewer (FireBrowse)C19orf35 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)374872
GTEX Portal (Tissue expression)C19orf35
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZS72   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZS72  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZS72
Splice isoforms : SwissVarQ6ZS72
PhosPhoSitePlusQ6ZS72
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C19orf35
DMDM Disease mutations374872
Blocks (Seattle)C19orf35
SuperfamilyQ6ZS72
Human Protein AtlasENSG00000188305
Peptide AtlasQ6ZS72
HPRD12707
IPIIPI00796957   IPI00867611   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZS72
IntAct (EBI)Q6ZS72
FunCoupENSG00000188305
BioGRIDC19orf35
STRING (EMBL)C19orf35
ZODIACC19orf35
Ontologies - Pathways
QuickGOQ6ZS72
Ontology : AmiGOprotein kinase activity  focal adhesion  protein phosphorylation  actin cytoskeleton  
Ontology : EGO-EBIprotein kinase activity  focal adhesion  protein phosphorylation  actin cytoskeleton  
NDEx NetworkC19orf35
Atlas of Cancer Signalling NetworkC19orf35
Wikipedia pathwaysC19orf35
Orthology - Evolution
OrthoDB374872
GeneTree (enSembl)ENSG00000188305
Phylogenetic Trees/Animal Genes : TreeFamC19orf35
HOVERGENQ6ZS72
HOGENOMQ6ZS72
Homologs : HomoloGeneC19orf35
Homology/Alignments : Family Browser (UCSC)C19orf35
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC19orf35 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C19orf35
dbVarC19orf35
ClinVarC19orf35
1000_GenomesC19orf35 
Exome Variant ServerC19orf35
ExAC (Exome Aggregation Consortium)C19orf35 (select the gene name)
Genetic variants : HAPMAP374872
Genomic Variants (DGV)C19orf35 [DGVbeta]
DECIPHERC19orf35 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC19orf35 
Mutations
ICGC Data PortalC19orf35 
TCGA Data PortalC19orf35 
Broad Tumor PortalC19orf35
OASIS PortalC19orf35 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC19orf35  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC19orf35
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C19orf35
DgiDB (Drug Gene Interaction Database)C19orf35
DoCM (Curated mutations)C19orf35 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C19orf35 (select a term)
intoGenC19orf35
Cancer3DC19orf35(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC19orf35
Genetic Testing Registry C19orf35
NextProtQ6ZS72 [Medical]
TSGene374872
GENETestsC19orf35
Target ValidationC19orf35
Huge Navigator C19orf35 [HugePedia]
snp3D : Map Gene to Disease374872
BioCentury BCIQC19orf35
ClinGenC19orf35
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD374872
Chemical/Pharm GKB GenePA134922698
Clinical trialC19orf35
Miscellaneous
canSAR (ICR)C19orf35 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC19orf35
EVEXC19orf35
GoPubMedC19orf35
iHOPC19orf35
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:02:57 CEST 2017

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