Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C19orf38 (chromosome 19 open reading frame 38)

Identity

Alias_symbol (synonym)HIDE1
Other alias
HGNC (Hugo) C19orf38
LocusID (NCBI) 255809
Atlas_Id 61025
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 10848430 and ends at 10869684 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CARM1 (19p13.2) / C19orf38 (19p13.2)LDLR (19p13.2) / C19orf38 (19p13.2)SMARCA4 (19p13.2) / C19orf38 (19p13.2)
LDLR C19orf38SMARCA4 C19orf38CARM1 C19orf38

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C19orf38   34073
Cards
Entrez_Gene (NCBI)C19orf38  255809  chromosome 19 open reading frame 38
AliasesHIDE1
GeneCards (Weizmann)C19orf38
Ensembl hg19 (Hinxton)ENSG00000214212 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214212 [Gene_View]  chr19:10848430-10869684 [Contig_View]  C19orf38 [Vega]
ICGC DataPortalENSG00000214212
TCGA cBioPortalC19orf38
AceView (NCBI)C19orf38
Genatlas (Paris)C19orf38
WikiGenes255809
SOURCE (Princeton)C19orf38
Genetics Home Reference (NIH)C19orf38
Genomic and cartography
GoldenPath hg38 (UCSC)C19orf38  -     chr19:10848430-10869684 +  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C19orf38  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblC19orf38 - 19p13.2 [CytoView hg19]  C19orf38 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIC19orf38 [Mapview hg19]  C19orf38 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC157863
RefSeq transcript (Entrez)NM_001136482
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C19orf38
Cluster EST : UnigeneHs.440535 [ NCBI ]
CGAP (NCI)Hs.440535
Alternative Splicing GalleryENSG00000214212
Gene ExpressionC19orf38 [ NCBI-GEO ]   C19orf38 [ EBI - ARRAY_EXPRESS ]   C19orf38 [ SEEK ]   C19orf38 [ MEM ]
Gene Expression Viewer (FireBrowse)C19orf38 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)255809
GTEX Portal (Tissue expression)C19orf38
Human Protein AtlasENSG00000214212-C19orf38 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C19orf38
DMDM Disease mutations255809
Blocks (Seattle)C19orf38
Human Protein Atlas [tissue]ENSG00000214212-C19orf38 [tissue]
IPIIPI00159312   
Protein Interaction databases
FunCoupENSG00000214212
BioGRIDC19orf38
STRING (EMBL)C19orf38
ZODIACC19orf38
Ontologies - Pathways
Huge Navigator C19orf38 [HugePedia]
snp3D : Map Gene to Disease255809
BioCentury BCIQC19orf38
ClinGenC19orf38
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD255809
Chemical/Pharm GKB GenePA162378624
Clinical trialC19orf38
Miscellaneous
canSAR (ICR)C19orf38 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC19orf38
EVEXC19orf38
GoPubMedC19orf38
iHOPC19orf38
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:40:00 CET 2017

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