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C19orf43 (chromosome 19 open reading frame 43)

Identity

Alias_symbol (synonym)MGC2803
fSAP18
Other alias
HGNC (Hugo) C19orf43
LocusID (NCBI) 79002
Atlas_Id 61026
Location 19p13.13  [Link to chromosome band 19p13]
Location_base_pair Starts at 12730640 and ends at 12734775 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C19orf43 (19p13.2) / AP5Z1 (7p22.1)C19orf43 (19p13.2) / LRRFIP1 (2q37.3)C19orf43 (19p13.2) / THNSL2 (2p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C19orf43   28424
Cards
Entrez_Gene (NCBI)C19orf43  79002  chromosome 19 open reading frame 43
AliasesfSAP18
GeneCards (Weizmann)C19orf43
Ensembl hg19 (Hinxton)ENSG00000123144 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000123144 [Gene_View]  chr19:12730640-12734775 [Contig_View]  C19orf43 [Vega]
ICGC DataPortalENSG00000123144
TCGA cBioPortalC19orf43
AceView (NCBI)C19orf43
Genatlas (Paris)C19orf43
WikiGenes79002
SOURCE (Princeton)C19orf43
Genetics Home Reference (NIH)C19orf43
Genomic and cartography
GoldenPath hg38 (UCSC)C19orf43  -     chr19:12730640-12734775 -  19p13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C19orf43  -     19p13.13   [Description]    (hg19-Feb_2009)
EnsemblC19orf43 - 19p13.13 [CytoView hg19]  C19orf43 - 19p13.13 [CytoView hg38]
Mapping of homologs : NCBIC19orf43 [Mapview hg19]  C19orf43 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF061732 AK027588 AK315754 AL559579 BC000216
RefSeq transcript (Entrez)NM_001329738 NM_001329739 NM_024038
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C19orf43
Cluster EST : UnigeneHs.515155 [ NCBI ]
CGAP (NCI)Hs.515155
Alternative Splicing GalleryENSG00000123144
Gene ExpressionC19orf43 [ NCBI-GEO ]   C19orf43 [ EBI - ARRAY_EXPRESS ]   C19orf43 [ SEEK ]   C19orf43 [ MEM ]
Gene Expression Viewer (FireBrowse)C19orf43 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79002
GTEX Portal (Tissue expression)C19orf43
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQ61   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQ61  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQ61
Splice isoforms : SwissVarQ9BQ61
PhosPhoSitePlusQ9BQ61
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C19orf43
DMDM Disease mutations79002
Blocks (Seattle)C19orf43
SuperfamilyQ9BQ61
Human Protein AtlasENSG00000123144
Peptide AtlasQ9BQ61
HPRD14528
IPIIPI00031526   IPI00385958   
Protein Interaction databases
DIP (DOE-UCLA)Q9BQ61
IntAct (EBI)Q9BQ61
FunCoupENSG00000123144
BioGRIDC19orf43
STRING (EMBL)C19orf43
ZODIACC19orf43
Ontologies - Pathways
QuickGOQ9BQ61
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkC19orf43
Atlas of Cancer Signalling NetworkC19orf43
Wikipedia pathwaysC19orf43
Orthology - Evolution
OrthoDB79002
GeneTree (enSembl)ENSG00000123144
Phylogenetic Trees/Animal Genes : TreeFamC19orf43
HOVERGENQ9BQ61
HOGENOMQ9BQ61
Homologs : HomoloGeneC19orf43
Homology/Alignments : Family Browser (UCSC)C19orf43
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC19orf43 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C19orf43
dbVarC19orf43
ClinVarC19orf43
1000_GenomesC19orf43 
Exome Variant ServerC19orf43
ExAC (Exome Aggregation Consortium)C19orf43 (select the gene name)
Genetic variants : HAPMAP79002
Genomic Variants (DGV)C19orf43 [DGVbeta]
DECIPHERC19orf43 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC19orf43 
Mutations
ICGC Data PortalC19orf43 
TCGA Data PortalC19orf43 
Broad Tumor PortalC19orf43
OASIS PortalC19orf43 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC19orf43  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC19orf43
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C19orf43
DgiDB (Drug Gene Interaction Database)C19orf43
DoCM (Curated mutations)C19orf43 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C19orf43 (select a term)
intoGenC19orf43
Cancer3DC19orf43(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC19orf43
Genetic Testing Registry C19orf43
NextProtQ9BQ61 [Medical]
TSGene79002
GENETestsC19orf43
Target ValidationC19orf43
Huge Navigator C19orf43 [HugePedia]
snp3D : Map Gene to Disease79002
BioCentury BCIQC19orf43
ClinGenC19orf43
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79002
Chemical/Pharm GKB GenePA144596476
Clinical trialC19orf43
Miscellaneous
canSAR (ICR)C19orf43 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC19orf43
EVEXC19orf43
GoPubMedC19orf43
iHOPC19orf43
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:58 CEST 2017

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