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C19orf44 (chromosome 19 open reading frame 44)

Identity

Alias (NCBI)-
HGNC (Hugo) C19orf44
HGNC Alias symbFLJ21742
LocusID (NCBI) 84167
Atlas_Id 61027
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 16496311 and ends at 16521369 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
KDM4B (19p13.3) / C19orf44 (19p13.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  KDM4B/C19orf44 (19p13)

External links

Nomenclature
HGNC (Hugo)C19orf44   26141
Cards
Entrez_Gene (NCBI)C19orf44    chromosome 19 open reading frame 44
Aliases
GeneCards (Weizmann)C19orf44
Ensembl hg19 (Hinxton)ENSG00000105072 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105072 [Gene_View]  ENSG00000105072 [Sequence]  chr19:16496311-16521369 [Contig_View]  C19orf44 [Vega]
ICGC DataPortalENSG00000105072
TCGA cBioPortalC19orf44
AceView (NCBI)C19orf44
Genatlas (Paris)C19orf44
SOURCE (Princeton)C19orf44
Genetics Home Reference (NIH)C19orf44
Genomic and cartography
GoldenPath hg38 (UCSC)C19orf44  -     chr19:16496311-16521369 +  19p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C19orf44  -     19p13.11   [Description]    (hg19-Feb_2009)
GoldenPathC19orf44 - 19p13.11 [CytoView hg19]  C19orf44 - 19p13.11 [CytoView hg38]
ImmunoBaseENSG00000105072
genome Data Viewer NCBIC19orf44 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK025395 AK026145 AK225118 AK225678 AK297781
RefSeq transcript (Entrez)NM_001288834 NM_032207
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C19orf44
Alternative Splicing GalleryENSG00000105072
Gene ExpressionC19orf44 [ NCBI-GEO ]   C19orf44 [ EBI - ARRAY_EXPRESS ]   C19orf44 [ SEEK ]   C19orf44 [ MEM ]
Gene Expression Viewer (FireBrowse)C19orf44 [ Firebrowse - Broad ]
GenevisibleExpression of C19orf44 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84167
GTEX Portal (Tissue expression)C19orf44
Human Protein AtlasENSG00000105072-C19orf44 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H6X5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H6X5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H6X5
Splice isoforms : SwissVarQ9H6X5
PhosPhoSitePlusQ9H6X5
Domains : Interpro (EBI)C19orf44-like    DUF4614   
Domain families : Pfam (Sanger)DUF4614 (PF15391)   
Domain families : Pfam (NCBI)pfam15391   
Conserved Domain (NCBI)C19orf44
Blocks (Seattle)C19orf44
SuperfamilyQ9H6X5
Human Protein Atlas [tissue]ENSG00000105072-C19orf44 [tissue]
Peptide AtlasQ9H6X5
HPRD08641
IPIIPI00030430   IPI00384543   
Protein Interaction databases
DIP (DOE-UCLA)Q9H6X5
IntAct (EBI)Q9H6X5
BioGRIDC19orf44
STRING (EMBL)C19orf44
ZODIACC19orf44
Ontologies - Pathways
QuickGOQ9H6X5
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkC19orf44
Atlas of Cancer Signalling NetworkC19orf44
Wikipedia pathwaysC19orf44
Orthology - Evolution
OrthoDB84167
GeneTree (enSembl)ENSG00000105072
Phylogenetic Trees/Animal Genes : TreeFamC19orf44
HOGENOMQ9H6X5
Homologs : HomoloGeneC19orf44
Homology/Alignments : Family Browser (UCSC)C19orf44
Gene fusions - Rearrangements
Fusion : QuiverC19orf44
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC19orf44 [hg38]
dbVarC19orf44
ClinVarC19orf44
MonarchC19orf44
1000_GenomesC19orf44 
Exome Variant ServerC19orf44
GNOMAD BrowserENSG00000105072
Varsome BrowserC19orf44
Genomic Variants (DGV)C19orf44 [DGVbeta]
DECIPHERC19orf44 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC19orf44 
Mutations
ICGC Data PortalC19orf44 
TCGA Data PortalC19orf44 
Broad Tumor PortalC19orf44
OASIS PortalC19orf44 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC19orf44  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DC19orf44
Mutations and Diseases : HGMDC19orf44
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C19orf44
DgiDB (Drug Gene Interaction Database)C19orf44
DoCM (Curated mutations)C19orf44 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C19orf44 (select a term)
intoGenC19orf44
Cancer3DC19orf44(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC19orf44
MedgenC19orf44
Genetic Testing Registry C19orf44
NextProtQ9H6X5 [Medical]
GENETestsC19orf44
Target ValidationC19orf44
Huge Navigator C19orf44 [HugePedia]
ClinGenC19orf44
Clinical trials, drugs, therapy
MyCancerGenomeC19orf44
Protein Interactions : CTD
Pharm GKB GenePA145149498
Clinical trialC19orf44
Miscellaneous
canSAR (ICR)C19orf44 (select the gene name)
HarmonizomeC19orf44
DataMed IndexC19orf44
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC19orf44
EVEXC19orf44
GoPubMedC19orf44
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Sat Dec 5 16:47:45 CET 2020
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