Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C19orf44 (chromosome 19 open reading frame 44)

Identity

Alias_symbol (synonym)FLJ21742
Other alias-
HGNC (Hugo) C19orf44
LocusID (NCBI) 84167
Atlas_Id 61027
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 16607122 and ends at 16629263 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
KDM4B (19p13.3) / C19orf44 (19p13.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C19orf44   26141
Cards
Entrez_Gene (NCBI)C19orf44  84167  chromosome 19 open reading frame 44
Aliases
GeneCards (Weizmann)C19orf44
Ensembl hg19 (Hinxton)ENSG00000105072 [Gene_View]  chr19:16607122-16629263 [Contig_View]  C19orf44 [Vega]
Ensembl hg38 (Hinxton)ENSG00000105072 [Gene_View]  chr19:16607122-16629263 [Contig_View]  C19orf44 [Vega]
ICGC DataPortalENSG00000105072
TCGA cBioPortalC19orf44
AceView (NCBI)C19orf44
Genatlas (Paris)C19orf44
WikiGenes84167
SOURCE (Princeton)C19orf44
Genetics Home Reference (NIH)C19orf44
Genomic and cartography
GoldenPath hg19 (UCSC)C19orf44  -     chr19:16607122-16629263 +  19p13.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C19orf44  -     19p13.11   [Description]    (hg38-Dec_2013)
EnsemblC19orf44 - 19p13.11 [CytoView hg19]  C19orf44 - 19p13.11 [CytoView hg38]
Mapping of homologs : NCBIC19orf44 [Mapview hg19]  C19orf44 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK025395 AK026145 AK225118 AK225678 AK297781
RefSeq transcript (Entrez)NM_001288834 NM_032207
RefSeq genomic (Entrez)NC_000019 NC_018930 NG_031959 NT_011295 NW_004929414
Consensus coding sequences : CCDS (NCBI)C19orf44
Cluster EST : UnigeneHs.631627 [ NCBI ]
CGAP (NCI)Hs.631627
Alternative Splicing GalleryENSG00000105072
Gene ExpressionC19orf44 [ NCBI-GEO ]   C19orf44 [ EBI - ARRAY_EXPRESS ]   C19orf44 [ SEEK ]   C19orf44 [ MEM ]
Gene Expression Viewer (FireBrowse)C19orf44 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84167
GTEX Portal (Tissue expression)C19orf44
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H6X5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H6X5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H6X5
Splice isoforms : SwissVarQ9H6X5
PhosPhoSitePlusQ9H6X5
Domains : Interpro (EBI)DUF4614   
Domain families : Pfam (Sanger)DUF4614 (PF15391)   
Domain families : Pfam (NCBI)pfam15391   
Conserved Domain (NCBI)C19orf44
DMDM Disease mutations84167
Blocks (Seattle)C19orf44
SuperfamilyQ9H6X5
Human Protein AtlasENSG00000105072
Peptide AtlasQ9H6X5
HPRD08641
IPIIPI00030430   IPI00384543   
Protein Interaction databases
DIP (DOE-UCLA)Q9H6X5
IntAct (EBI)Q9H6X5
FunCoupENSG00000105072
BioGRIDC19orf44
STRING (EMBL)C19orf44
ZODIACC19orf44
Ontologies - Pathways
QuickGOQ9H6X5
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkC19orf44
Atlas of Cancer Signalling NetworkC19orf44
Wikipedia pathwaysC19orf44
Orthology - Evolution
OrthoDB84167
GeneTree (enSembl)ENSG00000105072
Phylogenetic Trees/Animal Genes : TreeFamC19orf44
HOVERGENQ9H6X5
HOGENOMQ9H6X5
Homologs : HomoloGeneC19orf44
Homology/Alignments : Family Browser (UCSC)C19orf44
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC19orf44 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C19orf44
dbVarC19orf44
ClinVarC19orf44
1000_GenomesC19orf44 
Exome Variant ServerC19orf44
ExAC (Exome Aggregation Consortium)C19orf44 (select the gene name)
Genetic variants : HAPMAP84167
Genomic Variants (DGV)C19orf44 [DGVbeta]
DECIPHER (Syndromes)19:16607122-16629263  ENSG00000105072
CONAN: Copy Number AnalysisC19orf44 
Mutations
ICGC Data PortalC19orf44 
TCGA Data PortalC19orf44 
Broad Tumor PortalC19orf44
OASIS PortalC19orf44 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC19orf44  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC19orf44
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C19orf44
DgiDB (Drug Gene Interaction Database)C19orf44
DoCM (Curated mutations)C19orf44 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C19orf44 (select a term)
intoGenC19orf44
Cancer3DC19orf44(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC19orf44
Genetic Testing Registry C19orf44
NextProtQ9H6X5 [Medical]
TSGene84167
GENETestsC19orf44
Huge Navigator C19orf44 [HugePedia]
snp3D : Map Gene to Disease84167
BioCentury BCIQC19orf44
ClinGenC19orf44
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84167
Chemical/Pharm GKB GenePA145149498
Clinical trialC19orf44
Miscellaneous
canSAR (ICR)C19orf44 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC19orf44
EVEXC19orf44
GoPubMedC19orf44
iHOPC19orf44
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:56:49 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.