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C19orf45 (chromosome 19 open reading frame 45)

Identity

Alias_symbol (synonym)FLJ35784
Other alias-
HGNC (Hugo) C19orf45
LocusID (NCBI) 374877
Atlas_Id 61028
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 7562445 and ends at 7573336 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C19orf45   24745
Cards
Entrez_Gene (NCBI)C19orf45  374877  chromosome 19 open reading frame 45
Aliases
GeneCards (Weizmann)C19orf45
Ensembl hg19 (Hinxton)ENSG00000198723 [Gene_View]  chr19:7562445-7573336 [Contig_View]  C19orf45 [Vega]
Ensembl hg38 (Hinxton)ENSG00000198723 [Gene_View]  chr19:7562445-7573336 [Contig_View]  C19orf45 [Vega]
ICGC DataPortalENSG00000198723
TCGA cBioPortalC19orf45
AceView (NCBI)C19orf45
Genatlas (Paris)C19orf45
WikiGenes374877
SOURCE (Princeton)C19orf45
Genetics Home Reference (NIH)C19orf45
Genomic and cartography
GoldenPath hg19 (UCSC)C19orf45  -     chr19:7562445-7573336 +  19p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C19orf45  -     19p13.2   [Description]    (hg38-Dec_2013)
EnsemblC19orf45 - 19p13.2 [CytoView hg19]  C19orf45 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIC19orf45 [Mapview hg19]  C19orf45 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093103 AK301623 BC029824 BC034779 DB037908
RefSeq transcript (Entrez)NM_198534
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011295 NW_004929413
Consensus coding sequences : CCDS (NCBI)C19orf45
Cluster EST : UnigeneHs.631862 [ NCBI ]
CGAP (NCI)Hs.631862
Alternative Splicing GalleryENSG00000198723
Gene ExpressionC19orf45 [ NCBI-GEO ]   C19orf45 [ EBI - ARRAY_EXPRESS ]   C19orf45 [ SEEK ]   C19orf45 [ MEM ]
Gene Expression Viewer (FireBrowse)C19orf45 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)374877
GTEX Portal (Tissue expression)C19orf45
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NA69   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NA69  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NA69
Splice isoforms : SwissVarQ8NA69
PhosPhoSitePlusQ8NA69
Domains : Interpro (EBI)DUF4601   
Domain families : Pfam (Sanger)DUF4601 (PF15373)   
Domain families : Pfam (NCBI)pfam15373   
Conserved Domain (NCBI)C19orf45
DMDM Disease mutations374877
Blocks (Seattle)C19orf45
SuperfamilyQ8NA69
Human Protein AtlasENSG00000198723
Peptide AtlasQ8NA69
HPRD13420
IPIIPI00373926   IPI00908848   IPI00927409   IPI00926734   IPI00926938   
Protein Interaction databases
DIP (DOE-UCLA)Q8NA69
IntAct (EBI)Q8NA69
FunCoupENSG00000198723
BioGRIDC19orf45
STRING (EMBL)C19orf45
ZODIACC19orf45
Ontologies - Pathways
QuickGOQ8NA69
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC19orf45
Atlas of Cancer Signalling NetworkC19orf45
Wikipedia pathwaysC19orf45
Orthology - Evolution
OrthoDB374877
GeneTree (enSembl)ENSG00000198723
Phylogenetic Trees/Animal Genes : TreeFamC19orf45
HOVERGENQ8NA69
HOGENOMQ8NA69
Homologs : HomoloGeneC19orf45
Homology/Alignments : Family Browser (UCSC)C19orf45
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC19orf45 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C19orf45
dbVarC19orf45
ClinVarC19orf45
1000_GenomesC19orf45 
Exome Variant ServerC19orf45
ExAC (Exome Aggregation Consortium)C19orf45 (select the gene name)
Genetic variants : HAPMAP374877
Genomic Variants (DGV)C19orf45 [DGVbeta]
DECIPHER (Syndromes)19:7562445-7573336  ENSG00000198723
CONAN: Copy Number AnalysisC19orf45 
Mutations
ICGC Data PortalC19orf45 
TCGA Data PortalC19orf45 
Broad Tumor PortalC19orf45
OASIS PortalC19orf45 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC19orf45  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC19orf45
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C19orf45
DgiDB (Drug Gene Interaction Database)C19orf45
DoCM (Curated mutations)C19orf45 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C19orf45 (select a term)
intoGenC19orf45
Cancer3DC19orf45(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC19orf45
Genetic Testing Registry C19orf45
NextProtQ8NA69 [Medical]
TSGene374877
GENETestsC19orf45
Huge Navigator C19orf45 [HugePedia]
snp3D : Map Gene to Disease374877
BioCentury BCIQC19orf45
ClinGenC19orf45
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD374877
Chemical/Pharm GKB GenePA145149520
Clinical trialC19orf45
Miscellaneous
canSAR (ICR)C19orf45 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC19orf45
EVEXC19orf45
GoPubMedC19orf45
iHOPC19orf45
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:56:49 CET 2017

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