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C19orf47 (chromosome 19 open reading frame 47)

Identity

Alias_symbol (synonym)FLJ36888
Other alias-
HGNC (Hugo) C19orf47
LocusID (NCBI) 126526
Atlas_Id 61029
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 40321060 and ends at 40348527 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C19orf47 (19q13.2) / AKT2 (19q13.2)SPTBN4 (19q13.2) / C19orf47 (19q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C19orf47   26723
Cards
Entrez_Gene (NCBI)C19orf47  126526  chromosome 19 open reading frame 47
Aliases
GeneCards (Weizmann)C19orf47
Ensembl hg19 (Hinxton)ENSG00000160392 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000160392 [Gene_View]  chr19:40321060-40348527 [Contig_View]  C19orf47 [Vega]
ICGC DataPortalENSG00000160392
TCGA cBioPortalC19orf47
AceView (NCBI)C19orf47
Genatlas (Paris)C19orf47
WikiGenes126526
SOURCE (Princeton)C19orf47
Genetics Home Reference (NIH)C19orf47
Genomic and cartography
GoldenPath hg38 (UCSC)C19orf47  -     chr19:40321060-40348527 -  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C19orf47  -     19q13.2   [Description]    (hg19-Feb_2009)
EnsemblC19orf47 - 19q13.2 [CytoView hg19]  C19orf47 - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBIC19orf47 [Mapview hg19]  C19orf47 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI394044 AK094207 AL834131 AM392529 AM392610
RefSeq transcript (Entrez)NM_001256440 NM_001256441 NM_178830
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C19orf47
Cluster EST : UnigeneHs.631557 [ NCBI ]
CGAP (NCI)Hs.631557
Alternative Splicing GalleryENSG00000160392
Gene ExpressionC19orf47 [ NCBI-GEO ]   C19orf47 [ EBI - ARRAY_EXPRESS ]   C19orf47 [ SEEK ]   C19orf47 [ MEM ]
Gene Expression Viewer (FireBrowse)C19orf47 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)126526
GTEX Portal (Tissue expression)C19orf47
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N9M1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N9M1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N9M1
Splice isoforms : SwissVarQ8N9M1
PhosPhoSitePlusQ8N9M1
Domains : Interpro (EBI)SAM/pointed   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C19orf47
DMDM Disease mutations126526
Blocks (Seattle)C19orf47
SuperfamilyQ8N9M1
Human Protein AtlasENSG00000160392
Peptide AtlasQ8N9M1
HPRD08216
IPIIPI00167762   IPI00395792   IPI00847400   IPI00981996   
Protein Interaction databases
DIP (DOE-UCLA)Q8N9M1
IntAct (EBI)Q8N9M1
FunCoupENSG00000160392
BioGRIDC19orf47
STRING (EMBL)C19orf47
ZODIACC19orf47
Ontologies - Pathways
QuickGOQ8N9M1
Ontology : AmiGOprotein binding  nucleoplasm  
Ontology : EGO-EBIprotein binding  nucleoplasm  
NDEx NetworkC19orf47
Atlas of Cancer Signalling NetworkC19orf47
Wikipedia pathwaysC19orf47
Orthology - Evolution
OrthoDB126526
GeneTree (enSembl)ENSG00000160392
Phylogenetic Trees/Animal Genes : TreeFamC19orf47
HOVERGENQ8N9M1
HOGENOMQ8N9M1
Homologs : HomoloGeneC19orf47
Homology/Alignments : Family Browser (UCSC)C19orf47
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC19orf47 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C19orf47
dbVarC19orf47
ClinVarC19orf47
1000_GenomesC19orf47 
Exome Variant ServerC19orf47
ExAC (Exome Aggregation Consortium)C19orf47 (select the gene name)
Genetic variants : HAPMAP126526
Genomic Variants (DGV)C19orf47 [DGVbeta]
DECIPHERC19orf47 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC19orf47 
Mutations
ICGC Data PortalC19orf47 
TCGA Data PortalC19orf47 
Broad Tumor PortalC19orf47
OASIS PortalC19orf47 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC19orf47  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC19orf47
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C19orf47
DgiDB (Drug Gene Interaction Database)C19orf47
DoCM (Curated mutations)C19orf47 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C19orf47 (select a term)
intoGenC19orf47
Cancer3DC19orf47(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC19orf47
Genetic Testing Registry C19orf47
NextProtQ8N9M1 [Medical]
TSGene126526
GENETestsC19orf47
Target ValidationC19orf47
Huge Navigator C19orf47 [HugePedia]
snp3D : Map Gene to Disease126526
BioCentury BCIQC19orf47
ClinGenC19orf47
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD126526
Chemical/Pharm GKB GenePA145149543
Clinical trialC19orf47
Miscellaneous
canSAR (ICR)C19orf47 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC19orf47
EVEXC19orf47
GoPubMedC19orf47
iHOPC19orf47
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:40:42 CEST 2017

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