Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C19orf52 (chromosome 19 open reading frame 52)

Identity

Other alias-
HGNC (Hugo) C19orf52
LocusID (NCBI) 90580
Atlas_Id 61030
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 11039424 and ends at 11040916 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C19orf52   25152
Cards
Entrez_Gene (NCBI)C19orf52  90580  chromosome 19 open reading frame 52
Aliases
GeneCards (Weizmann)C19orf52
Ensembl hg19 (Hinxton)ENSG00000142444 [Gene_View]  chr19:11039424-11040916 [Contig_View]  C19orf52 [Vega]
Ensembl hg38 (Hinxton)ENSG00000142444 [Gene_View]  chr19:11039424-11040916 [Contig_View]  C19orf52 [Vega]
ICGC DataPortalENSG00000142444
TCGA cBioPortalC19orf52
AceView (NCBI)C19orf52
Genatlas (Paris)C19orf52
WikiGenes90580
SOURCE (Princeton)C19orf52
Genetics Home Reference (NIH)C19orf52
Genomic and cartography
GoldenPath hg19 (UCSC)C19orf52  -     chr19:11039424-11040916 +  19p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C19orf52  -     19p13.2   [Description]    (hg38-Dec_2013)
EnsemblC19orf52 - 19p13.2 [CytoView hg19]  C19orf52 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIC19orf52 [Mapview hg19]  C19orf52 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC005075 BC007244 BC011833
RefSeq transcript (Entrez)NM_138358
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011295 NW_004929414
Consensus coding sequences : CCDS (NCBI)C19orf52
Cluster EST : UnigeneHs.164026 [ NCBI ]
CGAP (NCI)Hs.164026
Alternative Splicing GalleryENSG00000142444
Gene ExpressionC19orf52 [ NCBI-GEO ]   C19orf52 [ EBI - ARRAY_EXPRESS ]   C19orf52 [ SEEK ]   C19orf52 [ MEM ]
Gene Expression Viewer (FireBrowse)C19orf52 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90580
GTEX Portal (Tissue expression)C19orf52
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BSF4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BSF4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BSF4
Splice isoforms : SwissVarQ9BSF4
PhosPhoSitePlusQ9BSF4
Domains : Interpro (EBI)DUF2366   
Domain families : Pfam (Sanger)DUF2366 (PF10171)   
Domain families : Pfam (NCBI)pfam10171   
Conserved Domain (NCBI)C19orf52
DMDM Disease mutations90580
Blocks (Seattle)C19orf52
SuperfamilyQ9BSF4
Human Protein AtlasENSG00000142444
Peptide AtlasQ9BSF4
HPRD14275
IPIIPI00157215   
Protein Interaction databases
DIP (DOE-UCLA)Q9BSF4
IntAct (EBI)Q9BSF4
FunCoupENSG00000142444
BioGRIDC19orf52
STRING (EMBL)C19orf52
ZODIACC19orf52
Ontologies - Pathways
QuickGOQ9BSF4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC19orf52
Atlas of Cancer Signalling NetworkC19orf52
Wikipedia pathwaysC19orf52
Orthology - Evolution
OrthoDB90580
GeneTree (enSembl)ENSG00000142444
Phylogenetic Trees/Animal Genes : TreeFamC19orf52
HOVERGENQ9BSF4
HOGENOMQ9BSF4
Homologs : HomoloGeneC19orf52
Homology/Alignments : Family Browser (UCSC)C19orf52
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC19orf52 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C19orf52
dbVarC19orf52
ClinVarC19orf52
1000_GenomesC19orf52 
Exome Variant ServerC19orf52
ExAC (Exome Aggregation Consortium)C19orf52 (select the gene name)
Genetic variants : HAPMAP90580
Genomic Variants (DGV)C19orf52 [DGVbeta]
DECIPHER (Syndromes)19:11039424-11040916  ENSG00000142444
CONAN: Copy Number AnalysisC19orf52 
Mutations
ICGC Data PortalC19orf52 
TCGA Data PortalC19orf52 
Broad Tumor PortalC19orf52
OASIS PortalC19orf52 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC19orf52  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC19orf52
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C19orf52
DgiDB (Drug Gene Interaction Database)C19orf52
DoCM (Curated mutations)C19orf52 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C19orf52 (select a term)
intoGenC19orf52
Cancer3DC19orf52(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC19orf52
Genetic Testing Registry C19orf52
NextProtQ9BSF4 [Medical]
TSGene90580
GENETestsC19orf52
Huge Navigator C19orf52 [HugePedia]
snp3D : Map Gene to Disease90580
BioCentury BCIQC19orf52
ClinGenC19orf52
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90580
Chemical/Pharm GKB GenePA147358399
Clinical trialC19orf52
Miscellaneous
canSAR (ICR)C19orf52 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC19orf52
EVEXC19orf52
GoPubMedC19orf52
iHOPC19orf52
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:56:49 CET 2017

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