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C19orf53 (chromosome 19 open reading frame 53)

Identity

Alias_symbol (synonym)HSPC023
LYDG10
Other alias
HGNC (Hugo) C19orf53
LocusID (NCBI) 28974
Atlas_Id 40883
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 13885257 and ends at 13889586 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C19orf53   24991
Cards
Entrez_Gene (NCBI)C19orf53  28974  chromosome 19 open reading frame 53
AliasesHSPC023; LYDG10
GeneCards (Weizmann)C19orf53
Ensembl hg19 (Hinxton)ENSG00000104979 [Gene_View]  chr19:13885257-13889586 [Contig_View]  C19orf53 [Vega]
Ensembl hg38 (Hinxton)ENSG00000104979 [Gene_View]  chr19:13885257-13889586 [Contig_View]  C19orf53 [Vega]
ICGC DataPortalENSG00000104979
TCGA cBioPortalC19orf53
AceView (NCBI)C19orf53
Genatlas (Paris)C19orf53
WikiGenes28974
SOURCE (Princeton)C19orf53
Genetics Home Reference (NIH)C19orf53
Genomic and cartography
GoldenPath hg19 (UCSC)C19orf53  -     chr19:13885257-13889586 +  19p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C19orf53  -     19p13.2   [Description]    (hg38-Dec_2013)
EnsemblC19orf53 - 19p13.2 [CytoView hg19]  C19orf53 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIC19orf53 [Mapview hg19]  C19orf53 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF078852 AF086483 AI689503 AK311855 BC015465
RefSeq transcript (Entrez)NM_014047
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011295 NW_004929414
Consensus coding sequences : CCDS (NCBI)C19orf53
Cluster EST : UnigeneHs.231616 [ NCBI ]
CGAP (NCI)Hs.231616
Alternative Splicing GalleryENSG00000104979
Gene ExpressionC19orf53 [ NCBI-GEO ]   C19orf53 [ EBI - ARRAY_EXPRESS ]   C19orf53 [ SEEK ]   C19orf53 [ MEM ]
Gene Expression Viewer (FireBrowse)C19orf53 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28974
GTEX Portal (Tissue expression)C19orf53
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UNZ5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UNZ5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UNZ5
Splice isoforms : SwissVarQ9UNZ5
PhosPhoSitePlusQ9UNZ5
Domains : Interpro (EBI)UPF0390   
Domain families : Pfam (Sanger)DUF2462 (PF09495)   
Domain families : Pfam (NCBI)pfam09495   
Conserved Domain (NCBI)C19orf53
DMDM Disease mutations28974
Blocks (Seattle)C19orf53
SuperfamilyQ9UNZ5
Human Protein AtlasENSG00000104979
Peptide AtlasQ9UNZ5
HPRD13687
IPIIPI00022317   
Protein Interaction databases
DIP (DOE-UCLA)Q9UNZ5
IntAct (EBI)Q9UNZ5
FunCoupENSG00000104979
BioGRIDC19orf53
STRING (EMBL)C19orf53
ZODIACC19orf53
Ontologies - Pathways
QuickGOQ9UNZ5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC19orf53
Atlas of Cancer Signalling NetworkC19orf53
Wikipedia pathwaysC19orf53
Orthology - Evolution
OrthoDB28974
GeneTree (enSembl)ENSG00000104979
Phylogenetic Trees/Animal Genes : TreeFamC19orf53
HOVERGENQ9UNZ5
HOGENOMQ9UNZ5
Homologs : HomoloGeneC19orf53
Homology/Alignments : Family Browser (UCSC)C19orf53
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC19orf53 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C19orf53
dbVarC19orf53
ClinVarC19orf53
1000_GenomesC19orf53 
Exome Variant ServerC19orf53
ExAC (Exome Aggregation Consortium)C19orf53 (select the gene name)
Genetic variants : HAPMAP28974
Genomic Variants (DGV)C19orf53 [DGVbeta]
DECIPHER (Syndromes)19:13885257-13889586  ENSG00000104979
CONAN: Copy Number AnalysisC19orf53 
Mutations
ICGC Data PortalC19orf53 
TCGA Data PortalC19orf53 
Broad Tumor PortalC19orf53
OASIS PortalC19orf53 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC19orf53  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC19orf53
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C19orf53
DgiDB (Drug Gene Interaction Database)C19orf53
DoCM (Curated mutations)C19orf53 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C19orf53 (select a term)
intoGenC19orf53
Cancer3DC19orf53(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC19orf53
Genetic Testing Registry C19orf53
NextProtQ9UNZ5 [Medical]
TSGene28974
GENETestsC19orf53
Huge Navigator C19orf53 [HugePedia]
snp3D : Map Gene to Disease28974
BioCentury BCIQC19orf53
ClinGenC19orf53
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28974
Chemical/Pharm GKB GenePA147358407
Clinical trialC19orf53
Miscellaneous
canSAR (ICR)C19orf53 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC19orf53
EVEXC19orf53
GoPubMedC19orf53
iHOPC19orf53
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:54:28 CEST 2017

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