Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C19orf54 (chromosome 19 open reading frame 54)

Identity

Alias_symbol (synonym)FLJ41131
Other alias-
HGNC (Hugo) C19orf54
LocusID (NCBI) 284325
Atlas_Id 61031
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 41246761 and ends at 41255828 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SNRPA (19q13.2) / C19orf54 (19q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C19orf54   24758
Cards
Entrez_Gene (NCBI)C19orf54  284325  chromosome 19 open reading frame 54
Aliases
GeneCards (Weizmann)C19orf54
Ensembl hg19 (Hinxton)ENSG00000188493 [Gene_View]  chr19:41246761-41255828 [Contig_View]  C19orf54 [Vega]
Ensembl hg38 (Hinxton)ENSG00000188493 [Gene_View]  chr19:41246761-41255828 [Contig_View]  C19orf54 [Vega]
ICGC DataPortalENSG00000188493
TCGA cBioPortalC19orf54
AceView (NCBI)C19orf54
Genatlas (Paris)C19orf54
WikiGenes284325
SOURCE (Princeton)C19orf54
Genetics Home Reference (NIH)C19orf54
Genomic and cartography
GoldenPath hg19 (UCSC)C19orf54  -     chr19:41246761-41255828 -  19q13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C19orf54  -     19q13.2   [Description]    (hg38-Dec_2013)
EnsemblC19orf54 - 19q13.2 [CytoView hg19]  C19orf54 - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBIC19orf54 [Mapview hg19]  C19orf54 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI250667 AK123126 AK298068 AK310021 BC020262
RefSeq transcript (Entrez)NM_198476
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)C19orf54
Cluster EST : UnigeneHs.585105 [ NCBI ]
CGAP (NCI)Hs.585105
Alternative Splicing GalleryENSG00000188493
Gene ExpressionC19orf54 [ NCBI-GEO ]   C19orf54 [ EBI - ARRAY_EXPRESS ]   C19orf54 [ SEEK ]   C19orf54 [ MEM ]
Gene Expression Viewer (FireBrowse)C19orf54 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284325
GTEX Portal (Tissue expression)C19orf54
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5BKX5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5BKX5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5BKX5
Splice isoforms : SwissVarQ5BKX5
PhosPhoSitePlusQ5BKX5
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C19orf54
DMDM Disease mutations284325
Blocks (Seattle)C19orf54
SuperfamilyQ5BKX5
Human Protein AtlasENSG00000188493
Peptide AtlasQ5BKX5
HPRD13449
IPIIPI00556144   IPI00916437   IPI00970842   
Protein Interaction databases
DIP (DOE-UCLA)Q5BKX5
IntAct (EBI)Q5BKX5
FunCoupENSG00000188493
BioGRIDC19orf54
STRING (EMBL)C19orf54
ZODIACC19orf54
Ontologies - Pathways
QuickGOQ5BKX5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC19orf54
Atlas of Cancer Signalling NetworkC19orf54
Wikipedia pathwaysC19orf54
Orthology - Evolution
OrthoDB284325
GeneTree (enSembl)ENSG00000188493
Phylogenetic Trees/Animal Genes : TreeFamC19orf54
HOVERGENQ5BKX5
HOGENOMQ5BKX5
Homologs : HomoloGeneC19orf54
Homology/Alignments : Family Browser (UCSC)C19orf54
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC19orf54 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C19orf54
dbVarC19orf54
ClinVarC19orf54
1000_GenomesC19orf54 
Exome Variant ServerC19orf54
ExAC (Exome Aggregation Consortium)C19orf54 (select the gene name)
Genetic variants : HAPMAP284325
Genomic Variants (DGV)C19orf54 [DGVbeta]
DECIPHER (Syndromes)19:41246761-41255828  ENSG00000188493
CONAN: Copy Number AnalysisC19orf54 
Mutations
ICGC Data PortalC19orf54 
TCGA Data PortalC19orf54 
Broad Tumor PortalC19orf54
OASIS PortalC19orf54 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC19orf54  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC19orf54
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C19orf54
DgiDB (Drug Gene Interaction Database)C19orf54
DoCM (Curated mutations)C19orf54 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C19orf54 (select a term)
intoGenC19orf54
Cancer3DC19orf54(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC19orf54
Genetic Testing Registry C19orf54
NextProtQ5BKX5 [Medical]
TSGene284325
GENETestsC19orf54
Huge Navigator C19orf54 [HugePedia]
snp3D : Map Gene to Disease284325
BioCentury BCIQC19orf54
ClinGenC19orf54
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284325
Chemical/Pharm GKB GenePA147358417
Clinical trialC19orf54
Miscellaneous
canSAR (ICR)C19orf54 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC19orf54
EVEXC19orf54
GoPubMedC19orf54
iHOPC19orf54
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:56:50 CET 2017

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