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C19orf57 (chromosome 19 open reading frame 57)

Identity

Alias_symbol (synonym)MGC11271
Other alias-
HGNC (Hugo) C19orf57
LocusID (NCBI) 79173
Atlas_Id 61032
Location 19p13.12  [Link to chromosome band 19p13]
Location_base_pair Starts at 13882348 and ends at 13906165 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C19orf57 (19p13.13) / ASXL2 (2p23.3)CUTC (10q24.2) / C19orf57 (19p13.13)HAUS8 (19p13.11) / C19orf57 (19p13.13)
CUTC C19orf57HAUS8 C19orf57

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C19orf57   28153
Cards
Entrez_Gene (NCBI)C19orf57  79173  chromosome 19 open reading frame 57
Aliases
GeneCards (Weizmann)C19orf57
Ensembl hg19 (Hinxton)ENSG00000132016 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132016 [Gene_View]  chr19:13882348-13906165 [Contig_View]  C19orf57 [Vega]
ICGC DataPortalENSG00000132016
TCGA cBioPortalC19orf57
AceView (NCBI)C19orf57
Genatlas (Paris)C19orf57
WikiGenes79173
SOURCE (Princeton)C19orf57
Genetics Home Reference (NIH)C19orf57
Genomic and cartography
GoldenPath hg38 (UCSC)C19orf57  -     chr19:13882348-13906165 -  19p13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C19orf57  -     19p13.12   [Description]    (hg19-Feb_2009)
EnsemblC19orf57 - 19p13.12 [CytoView hg19]  C19orf57 - 19p13.12 [CytoView hg38]
Mapping of homologs : NCBIC19orf57 [Mapview hg19]  C19orf57 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097431 BC002891 BC012945 BC119718 BC119719
RefSeq transcript (Entrez)NM_001345843 NM_001345844 NM_001345846 NM_001345847 NM_001345848 NM_024323
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C19orf57
Cluster EST : UnigeneHs.143288 [ NCBI ]
CGAP (NCI)Hs.143288
Alternative Splicing GalleryENSG00000132016
Gene ExpressionC19orf57 [ NCBI-GEO ]   C19orf57 [ EBI - ARRAY_EXPRESS ]   C19orf57 [ SEEK ]   C19orf57 [ MEM ]
Gene Expression Viewer (FireBrowse)C19orf57 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79173
GTEX Portal (Tissue expression)C19orf57
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ0VDD7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ0VDD7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ0VDD7
Splice isoforms : SwissVarQ0VDD7
PhosPhoSitePlusQ0VDD7
Domains : Interpro (EBI)DUF4671   
Domain families : Pfam (Sanger)DUF4671 (PF15710)   
Domain families : Pfam (NCBI)pfam15710   
Conserved Domain (NCBI)C19orf57
DMDM Disease mutations79173
Blocks (Seattle)C19orf57
SuperfamilyQ0VDD7
Human Protein AtlasENSG00000132016
Peptide AtlasQ0VDD7
HPRD14415
IPIIPI00550720   IPI00167300   
Protein Interaction databases
DIP (DOE-UCLA)Q0VDD7
IntAct (EBI)Q0VDD7
FunCoupENSG00000132016
BioGRIDC19orf57
STRING (EMBL)C19orf57
ZODIACC19orf57
Ontologies - Pathways
QuickGOQ0VDD7
Ontology : AmiGOmolecular_function  protein binding  cellular_component  multicellular organism development  
Ontology : EGO-EBImolecular_function  protein binding  cellular_component  multicellular organism development  
NDEx NetworkC19orf57
Atlas of Cancer Signalling NetworkC19orf57
Wikipedia pathwaysC19orf57
Orthology - Evolution
OrthoDB79173
GeneTree (enSembl)ENSG00000132016
Phylogenetic Trees/Animal Genes : TreeFamC19orf57
HOVERGENQ0VDD7
HOGENOMQ0VDD7
Homologs : HomoloGeneC19orf57
Homology/Alignments : Family Browser (UCSC)C19orf57
Gene fusions - Rearrangements
Fusion: TCGACUTC C19orf57
Fusion: TCGAHAUS8 C19orf57
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC19orf57 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C19orf57
dbVarC19orf57
ClinVarC19orf57
1000_GenomesC19orf57 
Exome Variant ServerC19orf57
ExAC (Exome Aggregation Consortium)C19orf57 (select the gene name)
Genetic variants : HAPMAP79173
Genomic Variants (DGV)C19orf57 [DGVbeta]
DECIPHERC19orf57 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC19orf57 
Mutations
ICGC Data PortalC19orf57 
TCGA Data PortalC19orf57 
Broad Tumor PortalC19orf57
OASIS PortalC19orf57 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC19orf57  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC19orf57
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C19orf57
DgiDB (Drug Gene Interaction Database)C19orf57
DoCM (Curated mutations)C19orf57 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C19orf57 (select a term)
intoGenC19orf57
Cancer3DC19orf57(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC19orf57
Genetic Testing Registry C19orf57
NextProtQ0VDD7 [Medical]
TSGene79173
GENETestsC19orf57
Target ValidationC19orf57
Huge Navigator C19orf57 [HugePedia]
snp3D : Map Gene to Disease79173
BioCentury BCIQC19orf57
ClinGenC19orf57
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79173
Chemical/Pharm GKB GenePA162378679
Clinical trialC19orf57
Miscellaneous
canSAR (ICR)C19orf57 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC19orf57
EVEXC19orf57
GoPubMedC19orf57
iHOPC19orf57
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:40:43 CEST 2017

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