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C19orf60 (chromosome 19 open reading frame 60)

Identity

Alias_symbol (synonym)FLJ20850
FLJ30108
FLJ34606
FLJ37391
Other alias-
HGNC (Hugo) C19orf60
LocusID (NCBI) 55049
Atlas_Id 61033
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 18588685 and ends at 18592337 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C19orf60 (19p13.11) / NR4A2 (2q24.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C19orf60   26098
Cards
Entrez_Gene (NCBI)C19orf60  55049  chromosome 19 open reading frame 60
Aliases
GeneCards (Weizmann)C19orf60
Ensembl hg19 (Hinxton)ENSG00000006015 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000006015 [Gene_View]  chr19:18588685-18592337 [Contig_View]  C19orf60 [Vega]
ICGC DataPortalENSG00000006015
TCGA cBioPortalC19orf60
AceView (NCBI)C19orf60
Genatlas (Paris)C19orf60
WikiGenes55049
SOURCE (Princeton)C19orf60
Genetics Home Reference (NIH)C19orf60
Genomic and cartography
GoldenPath hg38 (UCSC)C19orf60  -     chr19:18588685-18592337 +  19p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C19orf60  -     19p13.11   [Description]    (hg19-Feb_2009)
EnsemblC19orf60 - 19p13.11 [CytoView hg19]  C19orf60 - 19p13.11 [CytoView hg38]
Mapping of homologs : NCBIC19orf60 [Mapview hg19]  C19orf60 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000857 AK054670 AK091925 AK094710 BC012078
RefSeq transcript (Entrez)NM_001100418 NM_001100419 NM_017967
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C19orf60
Cluster EST : UnigeneHs.655317 [ NCBI ]
CGAP (NCI)Hs.655317
Alternative Splicing GalleryENSG00000006015
Gene ExpressionC19orf60 [ NCBI-GEO ]   C19orf60 [ EBI - ARRAY_EXPRESS ]   C19orf60 [ SEEK ]   C19orf60 [ MEM ]
Gene Expression Viewer (FireBrowse)C19orf60 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55049
GTEX Portal (Tissue expression)C19orf60
Human Protein AtlasENSG00000006015-C19orf60 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96EN9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96EN9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96EN9
Splice isoforms : SwissVarQ96EN9
PhosPhoSitePlusQ96EN9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C19orf60
DMDM Disease mutations55049
Blocks (Seattle)C19orf60
SuperfamilyQ96EN9
Human Protein Atlas [tissue]ENSG00000006015-C19orf60 [tissue]
Peptide AtlasQ96EN9
HPRD07948
IPIIPI00101267   IPI00953361   IPI00856068   
Protein Interaction databases
DIP (DOE-UCLA)Q96EN9
IntAct (EBI)Q96EN9
FunCoupENSG00000006015
BioGRIDC19orf60
STRING (EMBL)C19orf60
ZODIACC19orf60
Ontologies - Pathways
QuickGOQ96EN9
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkC19orf60
Atlas of Cancer Signalling NetworkC19orf60
Wikipedia pathwaysC19orf60
Orthology - Evolution
OrthoDB55049
GeneTree (enSembl)ENSG00000006015
Phylogenetic Trees/Animal Genes : TreeFamC19orf60
HOVERGENQ96EN9
HOGENOMQ96EN9
Homologs : HomoloGeneC19orf60
Homology/Alignments : Family Browser (UCSC)C19orf60
Gene fusions - Rearrangements
Tumor Fusion PortalC19orf60
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC19orf60 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C19orf60
dbVarC19orf60
ClinVarC19orf60
1000_GenomesC19orf60 
Exome Variant ServerC19orf60
ExAC (Exome Aggregation Consortium)ENSG00000006015
GNOMAD BrowserENSG00000006015
Genetic variants : HAPMAP55049
Genomic Variants (DGV)C19orf60 [DGVbeta]
DECIPHERC19orf60 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC19orf60 
Mutations
ICGC Data PortalC19orf60 
TCGA Data PortalC19orf60 
Broad Tumor PortalC19orf60
OASIS PortalC19orf60 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC19orf60  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC19orf60
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C19orf60
DgiDB (Drug Gene Interaction Database)C19orf60
DoCM (Curated mutations)C19orf60 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C19orf60 (select a term)
intoGenC19orf60
Cancer3DC19orf60(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC19orf60
MedgenC19orf60
Genetic Testing Registry C19orf60
NextProtQ96EN9 [Medical]
TSGene55049
GENETestsC19orf60
Target ValidationC19orf60
Huge Navigator C19orf60 [HugePedia]
snp3D : Map Gene to Disease55049
BioCentury BCIQC19orf60
ClinGenC19orf60
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55049
Chemical/Pharm GKB GenePA162378719
Clinical trialC19orf60
Miscellaneous
canSAR (ICR)C19orf60 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC19orf60
EVEXC19orf60
GoPubMedC19orf60
iHOPC19orf60
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:44:45 CET 2017

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