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C19orf66 (chromosome 19 open reading frame 66)

Identity

Alias_symbol (synonym)FLJ11286
RyDEN
Other aliasIRAV
HGNC (Hugo) C19orf66
LocusID (NCBI) 55337
Atlas_Id 61034
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 10086119 and ends at 10093252 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C19orf66 (19p13.2) / C19orf66 (19p13.2)ETV6 (12p13.2) / C19orf66 (19p13.2)STRN3 (14q12) / C19orf66 (19p13.2)
TRPS1 (8q23.3) / C19orf66 (19p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C19orf66   25649
Cards
Entrez_Gene (NCBI)C19orf66  55337  chromosome 19 open reading frame 66
AliasesIRAV; RyDEN
GeneCards (Weizmann)C19orf66
Ensembl hg19 (Hinxton)ENSG00000130813 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130813 [Gene_View]  chr19:10086119-10093252 [Contig_View]  C19orf66 [Vega]
ICGC DataPortalENSG00000130813
TCGA cBioPortalC19orf66
AceView (NCBI)C19orf66
Genatlas (Paris)C19orf66
WikiGenes55337
SOURCE (Princeton)C19orf66
Genetics Home Reference (NIH)C19orf66
Genomic and cartography
GoldenPath hg38 (UCSC)C19orf66  -     chr19:10086119-10093252 +  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C19orf66  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblC19orf66 - 19p13.2 [CytoView hg19]  C19orf66 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIC19orf66 [Mapview hg19]  C19orf66 [Mapview hg38]
OMIM616808   
Gene and transcription
Genbank (Entrez)AK001098 AK002148 AK096142 AK098062 AL137694
RefSeq transcript (Entrez)NM_001308277 NM_018381
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C19orf66
Cluster EST : UnigeneHs.655613 [ NCBI ]
CGAP (NCI)Hs.655613
Alternative Splicing GalleryENSG00000130813
Gene ExpressionC19orf66 [ NCBI-GEO ]   C19orf66 [ EBI - ARRAY_EXPRESS ]   C19orf66 [ SEEK ]   C19orf66 [ MEM ]
Gene Expression Viewer (FireBrowse)C19orf66 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55337
GTEX Portal (Tissue expression)C19orf66
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NUL5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NUL5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NUL5
Splice isoforms : SwissVarQ9NUL5
PhosPhoSitePlusQ9NUL5
Domains : Interpro (EBI)RyDEN   
Domain families : Pfam (Sanger)UPF0515 (PF15135)   
Domain families : Pfam (NCBI)pfam15135   
Conserved Domain (NCBI)C19orf66
DMDM Disease mutations55337
Blocks (Seattle)C19orf66
SuperfamilyQ9NUL5
Human Protein AtlasENSG00000130813
Peptide AtlasQ9NUL5
HPRD07747
IPIIPI00413853   IPI00167592   IPI00642518   IPI00383563   
Protein Interaction databases
DIP (DOE-UCLA)Q9NUL5
IntAct (EBI)Q9NUL5
FunCoupENSG00000130813
BioGRIDC19orf66
STRING (EMBL)C19orf66
ZODIACC19orf66
Ontologies - Pathways
QuickGOQ9NUL5
Ontology : AmiGORNA binding  protein binding  nucleus  cytoplasm  response to type I interferon  response to interferon-gamma  response to type III interferon  negative regulation of viral genome replication  defense response to virus  
Ontology : EGO-EBIRNA binding  protein binding  nucleus  cytoplasm  response to type I interferon  response to interferon-gamma  response to type III interferon  negative regulation of viral genome replication  defense response to virus  
NDEx NetworkC19orf66
Atlas of Cancer Signalling NetworkC19orf66
Wikipedia pathwaysC19orf66
Orthology - Evolution
OrthoDB55337
GeneTree (enSembl)ENSG00000130813
Phylogenetic Trees/Animal Genes : TreeFamC19orf66
HOVERGENQ9NUL5
HOGENOMQ9NUL5
Homologs : HomoloGeneC19orf66
Homology/Alignments : Family Browser (UCSC)C19orf66
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC19orf66 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C19orf66
dbVarC19orf66
ClinVarC19orf66
1000_GenomesC19orf66 
Exome Variant ServerC19orf66
ExAC (Exome Aggregation Consortium)C19orf66 (select the gene name)
Genetic variants : HAPMAP55337
Genomic Variants (DGV)C19orf66 [DGVbeta]
DECIPHERC19orf66 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC19orf66 
Mutations
ICGC Data PortalC19orf66 
TCGA Data PortalC19orf66 
Broad Tumor PortalC19orf66
OASIS PortalC19orf66 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC19orf66  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC19orf66
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C19orf66
DgiDB (Drug Gene Interaction Database)C19orf66
DoCM (Curated mutations)C19orf66 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C19orf66 (select a term)
intoGenC19orf66
Cancer3DC19orf66(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616808   
Orphanet
MedgenC19orf66
Genetic Testing Registry C19orf66
NextProtQ9NUL5 [Medical]
TSGene55337
GENETestsC19orf66
Huge Navigator C19orf66 [HugePedia]
snp3D : Map Gene to Disease55337
BioCentury BCIQC19orf66
ClinGenC19orf66
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55337
Chemical/Pharm GKB GenePA162378809
Clinical trialC19orf66
Miscellaneous
canSAR (ICR)C19orf66 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC19orf66
EVEXC19orf66
GoPubMedC19orf66
iHOPC19orf66
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:02:55 CEST 2017

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