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C19orf68 (chromosome 19 open reading frame 68)

Identity

Alias_symbol (synonym)LOC374920
Other alias-
HGNC (Hugo) C19orf68
LocusID (NCBI) 374920
Atlas_Id 61036
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 48170692 and ends at 48197620 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CHRAC1 (8q24.3) / C19orf68 (19q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C19orf68   34495
Cards
Entrez_Gene (NCBI)C19orf68  374920  chromosome 19 open reading frame 68
Aliases
GeneCards (Weizmann)C19orf68
Ensembl hg19 (Hinxton)ENSG00000185453 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185453 [Gene_View]  chr19:48170692-48197620 [Contig_View]  C19orf68 [Vega]
ICGC DataPortalENSG00000185453
TCGA cBioPortalC19orf68
AceView (NCBI)C19orf68
Genatlas (Paris)C19orf68
WikiGenes374920
SOURCE (Princeton)C19orf68
Genetics Home Reference (NIH)C19orf68
Genomic and cartography
GoldenPath hg38 (UCSC)C19orf68  -     chr19:48170692-48197620 +  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C19orf68  -     19q13.33   [Description]    (hg19-Feb_2009)
EnsemblC19orf68 - 19q13.33 [CytoView hg19]  C19orf68 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBIC19orf68 [Mapview hg19]  C19orf68 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC043386
RefSeq transcript (Entrez)NM_199341
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C19orf68
Cluster EST : UnigeneHs.664054 [ NCBI ]
CGAP (NCI)Hs.664054
Alternative Splicing GalleryENSG00000185453
Gene ExpressionC19orf68 [ NCBI-GEO ]   C19orf68 [ EBI - ARRAY_EXPRESS ]   C19orf68 [ SEEK ]   C19orf68 [ MEM ]
Gene Expression Viewer (FireBrowse)C19orf68 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)374920
GTEX Portal (Tissue expression)C19orf68
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86XI8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86XI8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86XI8
Splice isoforms : SwissVarQ86XI8
PhosPhoSitePlusQ86XI8
Domains : Interpro (EBI)SINA-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C19orf68
DMDM Disease mutations374920
Blocks (Seattle)C19orf68
SuperfamilyQ86XI8
Human Protein AtlasENSG00000185453
Peptide AtlasQ86XI8
HPRD14189
IPIIPI00793638   
Protein Interaction databases
DIP (DOE-UCLA)Q86XI8
IntAct (EBI)Q86XI8
FunCoupENSG00000185453
BioGRIDC19orf68
STRING (EMBL)C19orf68
ZODIACC19orf68
Ontologies - Pathways
QuickGOQ86XI8
Ontology : AmiGOprotein binding  nucleus  ubiquitin-dependent protein catabolic process  multicellular organism development  
Ontology : EGO-EBIprotein binding  nucleus  ubiquitin-dependent protein catabolic process  multicellular organism development  
NDEx NetworkC19orf68
Atlas of Cancer Signalling NetworkC19orf68
Wikipedia pathwaysC19orf68
Orthology - Evolution
OrthoDB374920
GeneTree (enSembl)ENSG00000185453
Phylogenetic Trees/Animal Genes : TreeFamC19orf68
HOVERGENQ86XI8
HOGENOMQ86XI8
Homologs : HomoloGeneC19orf68
Homology/Alignments : Family Browser (UCSC)C19orf68
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC19orf68 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C19orf68
dbVarC19orf68
ClinVarC19orf68
1000_GenomesC19orf68 
Exome Variant ServerC19orf68
ExAC (Exome Aggregation Consortium)C19orf68 (select the gene name)
Genetic variants : HAPMAP374920
Genomic Variants (DGV)C19orf68 [DGVbeta]
DECIPHERC19orf68 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC19orf68 
Mutations
ICGC Data PortalC19orf68 
TCGA Data PortalC19orf68 
Broad Tumor PortalC19orf68
OASIS PortalC19orf68 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC19orf68  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC19orf68
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C19orf68
DgiDB (Drug Gene Interaction Database)C19orf68
DoCM (Curated mutations)C19orf68 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C19orf68 (select a term)
intoGenC19orf68
Cancer3DC19orf68(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC19orf68
Genetic Testing Registry C19orf68
NextProtQ86XI8 [Medical]
TSGene374920
GENETestsC19orf68
Target ValidationC19orf68
Huge Navigator C19orf68 [HugePedia]
snp3D : Map Gene to Disease374920
BioCentury BCIQC19orf68
ClinGenC19orf68
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD374920
Chemical/Pharm GKB GenePA162378847
Clinical trialC19orf68
Miscellaneous
canSAR (ICR)C19orf68 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC19orf68
EVEXC19orf68
GoPubMedC19orf68
iHOPC19orf68
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:59 CEST 2017

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