Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C19orf71 (chromosome 19 open reading frame 71)

Identity

Alias_symbol (synonym)LOC100128569
Other alias-
HGNC (Hugo) C19orf71
LocusID (NCBI) 100128569
Atlas_Id 61038
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 3539155 and ends at 3544028 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C19orf71   34496
Cards
Entrez_Gene (NCBI)C19orf71  100128569  chromosome 19 open reading frame 71
Aliases
GeneCards (Weizmann)C19orf71
Ensembl hg19 (Hinxton)ENSG00000183397 [Gene_View]  chr19:3539155-3544028 [Contig_View]  C19orf71 [Vega]
Ensembl hg38 (Hinxton)ENSG00000183397 [Gene_View]  chr19:3539155-3544028 [Contig_View]  C19orf71 [Vega]
ICGC DataPortalENSG00000183397
TCGA cBioPortalC19orf71
AceView (NCBI)C19orf71
Genatlas (Paris)C19orf71
WikiGenes100128569
SOURCE (Princeton)C19orf71
Genetics Home Reference (NIH)C19orf71
Genomic and cartography
GoldenPath hg19 (UCSC)C19orf71  -     chr19:3539155-3544028 +  19p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C19orf71  -     19p13.3   [Description]    (hg38-Dec_2013)
EnsemblC19orf71 - 19p13.3 [CytoView hg19]  C19orf71 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIC19orf71 [Mapview hg19]  C19orf71 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI138384 BX396051 DY654838
RefSeq transcript (Entrez)NM_001135580
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011295 NW_004929412
Consensus coding sequences : CCDS (NCBI)C19orf71
Cluster EST : UnigeneHs.664978 [ NCBI ]
CGAP (NCI)Hs.664978
Alternative Splicing GalleryENSG00000183397
Gene ExpressionC19orf71 [ NCBI-GEO ]   C19orf71 [ EBI - ARRAY_EXPRESS ]   C19orf71 [ SEEK ]   C19orf71 [ MEM ]
Gene Expression Viewer (FireBrowse)C19orf71 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100128569
GTEX Portal (Tissue expression)C19orf71
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NCJ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NCJ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NCJ1
Splice isoforms : SwissVarA6NCJ1
PhosPhoSitePlusA6NCJ1
Domains : Interpro (EBI)DUF4531   
Domain families : Pfam (Sanger)DUF4531 (PF15041)   
Domain families : Pfam (NCBI)pfam15041   
Conserved Domain (NCBI)C19orf71
DMDM Disease mutations100128569
Blocks (Seattle)C19orf71
SuperfamilyA6NCJ1
Human Protein AtlasENSG00000183397
Peptide AtlasA6NCJ1
IPIIPI00455371   
Protein Interaction databases
DIP (DOE-UCLA)A6NCJ1
IntAct (EBI)A6NCJ1
FunCoupENSG00000183397
BioGRIDC19orf71
STRING (EMBL)C19orf71
ZODIACC19orf71
Ontologies - Pathways
QuickGOA6NCJ1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC19orf71
Atlas of Cancer Signalling NetworkC19orf71
Wikipedia pathwaysC19orf71
Orthology - Evolution
OrthoDB100128569
GeneTree (enSembl)ENSG00000183397
Phylogenetic Trees/Animal Genes : TreeFamC19orf71
HOVERGENA6NCJ1
HOGENOMA6NCJ1
Homologs : HomoloGeneC19orf71
Homology/Alignments : Family Browser (UCSC)C19orf71
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC19orf71 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C19orf71
dbVarC19orf71
ClinVarC19orf71
1000_GenomesC19orf71 
Exome Variant ServerC19orf71
ExAC (Exome Aggregation Consortium)C19orf71 (select the gene name)
Genetic variants : HAPMAP100128569
Genomic Variants (DGV)C19orf71 [DGVbeta]
DECIPHER (Syndromes)19:3539155-3544028  ENSG00000183397
CONAN: Copy Number AnalysisC19orf71 
Mutations
ICGC Data PortalC19orf71 
TCGA Data PortalC19orf71 
Broad Tumor PortalC19orf71
OASIS PortalC19orf71 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC19orf71  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC19orf71
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C19orf71
DgiDB (Drug Gene Interaction Database)C19orf71
DoCM (Curated mutations)C19orf71 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C19orf71 (select a term)
intoGenC19orf71
Cancer3DC19orf71(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC19orf71
Genetic Testing Registry C19orf71
NextProtA6NCJ1 [Medical]
TSGene100128569
GENETestsC19orf71
Huge Navigator C19orf71 [HugePedia]
snp3D : Map Gene to Disease100128569
BioCentury BCIQC19orf71
ClinGenC19orf71
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100128569
Chemical/Pharm GKB GenePA164716956
Clinical trialC19orf71
Miscellaneous
canSAR (ICR)C19orf71 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC19orf71
EVEXC19orf71
GoPubMedC19orf71
iHOPC19orf71
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:56:51 CET 2017

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