Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C19orf73 (chromosome 19 open reading frame 73)

Identity

Alias (NCBI)-
HGNC (Hugo) C19orf73
HGNC Alias symbFLJ10490
LocusID (NCBI) 55150
Atlas_Id 61039
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 49118397 and ends at 49119140 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)C19orf73   25534
Cards
Entrez_Gene (NCBI)C19orf73    chromosome 19 open reading frame 73
Aliases
GeneCards (Weizmann)C19orf73
Ensembl hg19 (Hinxton)ENSG00000221916 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000221916 [Gene_View]  ENSG00000221916 [Sequence]  chr19:49118397-49119140 [Contig_View]  C19orf73 [Vega]
ICGC DataPortalENSG00000221916
TCGA cBioPortalC19orf73
AceView (NCBI)C19orf73
Genatlas (Paris)C19orf73
SOURCE (Princeton)C19orf73
Genetics Home Reference (NIH)C19orf73
Genomic and cartography
GoldenPath hg38 (UCSC)C19orf73  -     chr19:49118397-49119140 -  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C19orf73  -     19q13.33   [Description]    (hg19-Feb_2009)
GoldenPathC19orf73 - 19q13.33 [CytoView hg19]  C19orf73 - 19q13.33 [CytoView hg38]
ImmunoBaseENSG00000221916
genome Data Viewer NCBIC19orf73 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK001352 BC051004 BC069669 BC069693 BC069712
RefSeq transcript (Entrez)NM_018111
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C19orf73
Alternative Splicing GalleryENSG00000221916
Gene ExpressionC19orf73 [ NCBI-GEO ]   C19orf73 [ EBI - ARRAY_EXPRESS ]   C19orf73 [ SEEK ]   C19orf73 [ MEM ]
Gene Expression Viewer (FireBrowse)C19orf73 [ Firebrowse - Broad ]
GenevisibleExpression of C19orf73 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55150
GTEX Portal (Tissue expression)C19orf73
Human Protein AtlasENSG00000221916-C19orf73 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NVV2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NVV2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NVV2
Splice isoforms : SwissVarQ9NVV2
PhosPhoSitePlusQ9NVV2
Domains : Interpro (EBI)DUF5538   
Domain families : Pfam (Sanger)DUF5538 (PF17692)   
Domain families : Pfam (NCBI)pfam17692   
Conserved Domain (NCBI)C19orf73
Blocks (Seattle)C19orf73
SuperfamilyQ9NVV2
Human Protein Atlas [tissue]ENSG00000221916-C19orf73 [tissue]
Peptide AtlasQ9NVV2
HPRD07676
IPIIPI00018234   
Protein Interaction databases
DIP (DOE-UCLA)Q9NVV2
IntAct (EBI)Q9NVV2
BioGRIDC19orf73
STRING (EMBL)C19orf73
ZODIACC19orf73
Ontologies - Pathways
QuickGOQ9NVV2
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkC19orf73
Atlas of Cancer Signalling NetworkC19orf73
Wikipedia pathwaysC19orf73
Orthology - Evolution
OrthoDB55150
GeneTree (enSembl)ENSG00000221916
Phylogenetic Trees/Animal Genes : TreeFamC19orf73
HOGENOMQ9NVV2
Homologs : HomoloGeneC19orf73
Homology/Alignments : Family Browser (UCSC)C19orf73
Gene fusions - Rearrangements
Fusion : QuiverC19orf73
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC19orf73 [hg38]
dbVarC19orf73
ClinVarC19orf73
MonarchC19orf73
1000_GenomesC19orf73 
Exome Variant ServerC19orf73
GNOMAD BrowserENSG00000221916
Varsome BrowserC19orf73
Genomic Variants (DGV)C19orf73 [DGVbeta]
DECIPHERC19orf73 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC19orf73 
Mutations
ICGC Data PortalC19orf73 
TCGA Data PortalC19orf73 
Broad Tumor PortalC19orf73
OASIS PortalC19orf73 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC19orf73  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DC19orf73
Mutations and Diseases : HGMDC19orf73
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C19orf73
DgiDB (Drug Gene Interaction Database)C19orf73
DoCM (Curated mutations)C19orf73 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C19orf73 (select a term)
intoGenC19orf73
Cancer3DC19orf73(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC19orf73
MedgenC19orf73
Genetic Testing Registry C19orf73
NextProtQ9NVV2 [Medical]
GENETestsC19orf73
Target ValidationC19orf73
Huge Navigator C19orf73 [HugePedia]
ClinGenC19orf73
Clinical trials, drugs, therapy
MyCancerGenomeC19orf73
Protein Interactions : CTD
Pharm GKB GenePA164717000
Clinical trialC19orf73
Miscellaneous
canSAR (ICR)C19orf73 (select the gene name)
HarmonizomeC19orf73
DataMed IndexC19orf73
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC19orf73
EVEXC19orf73
GoPubMedC19orf73
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 5 16:47:46 CET 2020

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.