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C19orf81 (chromosome 19 open reading frame 81)

Identity

Other alias-
HGNC (Hugo) C19orf81
LocusID (NCBI) 342918
Atlas_Id 61040
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 50649445 and ends at 50659310 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PLXNA1 (3q21.3) / C19orf81 (19q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C19orf81   40041
Cards
Entrez_Gene (NCBI)C19orf81  342918  chromosome 19 open reading frame 81
Aliases
GeneCards (Weizmann)C19orf81
Ensembl hg19 (Hinxton)ENSG00000235034 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000235034 [Gene_View]  chr19:50649445-50659310 [Contig_View]  C19orf81 [Vega]
ICGC DataPortalENSG00000235034
TCGA cBioPortalC19orf81
AceView (NCBI)C19orf81
Genatlas (Paris)C19orf81
WikiGenes342918
SOURCE (Princeton)C19orf81
Genetics Home Reference (NIH)C19orf81
Genomic and cartography
GoldenPath hg38 (UCSC)C19orf81  -     chr19:50649445-50659310 +  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C19orf81  -     19q13.33   [Description]    (hg19-Feb_2009)
EnsemblC19orf81 - 19q13.33 [CytoView hg19]  C19orf81 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBIC19orf81 [Mapview hg19]  C19orf81 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BX281890
RefSeq transcript (Entrez)NM_001195076
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C19orf81
Cluster EST : UnigeneHs.531650 [ NCBI ]
CGAP (NCI)Hs.531650
Alternative Splicing GalleryENSG00000235034
Gene ExpressionC19orf81 [ NCBI-GEO ]   C19orf81 [ EBI - ARRAY_EXPRESS ]   C19orf81 [ SEEK ]   C19orf81 [ MEM ]
Gene Expression Viewer (FireBrowse)C19orf81 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)342918
GTEX Portal (Tissue expression)C19orf81
Human Protein AtlasENSG00000235034-C19orf81 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtC9J6K1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtC9J6K1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProC9J6K1
Splice isoforms : SwissVarC9J6K1
PhosPhoSitePlusC9J6K1
Domains : Interpro (EBI)DUF4732   
Domain families : Pfam (Sanger)DUF4732 (PF15876)   
Domain families : Pfam (NCBI)pfam15876   
Conserved Domain (NCBI)C19orf81
DMDM Disease mutations342918
Blocks (Seattle)C19orf81
SuperfamilyC9J6K1
Human Protein Atlas [tissue]ENSG00000235034-C19orf81 [tissue]
Peptide AtlasC9J6K1
IPIIPI00925066   IPI00925281   
Protein Interaction databases
DIP (DOE-UCLA)C9J6K1
IntAct (EBI)C9J6K1
FunCoupENSG00000235034
BioGRIDC19orf81
STRING (EMBL)C19orf81
ZODIACC19orf81
Ontologies - Pathways
QuickGOC9J6K1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC19orf81
Atlas of Cancer Signalling NetworkC19orf81
Wikipedia pathwaysC19orf81
Orthology - Evolution
OrthoDB342918
GeneTree (enSembl)ENSG00000235034
Phylogenetic Trees/Animal Genes : TreeFamC19orf81
HOVERGENC9J6K1
HOGENOMC9J6K1
Homologs : HomoloGeneC19orf81
Homology/Alignments : Family Browser (UCSC)C19orf81
Gene fusions - Rearrangements
Tumor Fusion PortalC19orf81
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC19orf81 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C19orf81
dbVarC19orf81
ClinVarC19orf81
1000_GenomesC19orf81 
Exome Variant ServerC19orf81
ExAC (Exome Aggregation Consortium)ENSG00000235034
GNOMAD BrowserENSG00000235034
Genetic variants : HAPMAP342918
Genomic Variants (DGV)C19orf81 [DGVbeta]
DECIPHERC19orf81 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC19orf81 
Mutations
ICGC Data PortalC19orf81 
TCGA Data PortalC19orf81 
Broad Tumor PortalC19orf81
OASIS PortalC19orf81 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC19orf81  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC19orf81
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C19orf81
DgiDB (Drug Gene Interaction Database)C19orf81
DoCM (Curated mutations)C19orf81 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C19orf81 (select a term)
intoGenC19orf81
Cancer3DC19orf81(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC19orf81
MedgenC19orf81
Genetic Testing Registry C19orf81
NextProtC9J6K1 [Medical]
TSGene342918
GENETestsC19orf81
Target ValidationC19orf81
Huge Navigator C19orf81 [HugePedia]
snp3D : Map Gene to Disease342918
BioCentury BCIQC19orf81
ClinGenC19orf81
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD342918
Chemical/Pharm GKB GenePA166049061
Clinical trialC19orf81
Miscellaneous
canSAR (ICR)C19orf81 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineC19orf81
EVEXC19orf81
GoPubMedC19orf81
iHOPC19orf81
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:38:14 CET 2017

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