Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C19orf84 (chromosome 19 open reading frame 84)

Identity

Other alias-
HGNC (Hugo) C19orf84
LocusID (NCBI) 147646
Atlas_Id 61042
Location 19q13.41  [Link to chromosome band 19q13]
Location_base_pair Starts at 51388289 and ends at 51390574 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C19orf84   27112
Cards
Entrez_Gene (NCBI)C19orf84  147646  chromosome 19 open reading frame 84
Aliases
GeneCards (Weizmann)C19orf84
Ensembl hg19 (Hinxton)ENSG00000262874 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000262874 [Gene_View]  chr19:51388289-51390574 [Contig_View]  C19orf84 [Vega]
ICGC DataPortalENSG00000262874
TCGA cBioPortalC19orf84
AceView (NCBI)C19orf84
Genatlas (Paris)C19orf84
WikiGenes147646
SOURCE (Princeton)C19orf84
Genetics Home Reference (NIH)C19orf84
Genomic and cartography
GoldenPath hg38 (UCSC)C19orf84  -     chr19:51388289-51390574 -  19q13.41   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C19orf84  -     19q13.41   [Description]    (hg19-Feb_2009)
EnsemblC19orf84 - 19q13.41 [CytoView hg19]  C19orf84 - 19q13.41 [CytoView hg38]
Mapping of homologs : NCBIC19orf84 [Mapview hg19]  C19orf84 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC043532 BC085012 BC143997
RefSeq transcript (Entrez)NM_001193623
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C19orf84
Cluster EST : UnigeneHs.148344 [ NCBI ]
CGAP (NCI)Hs.148344
Alternative Splicing GalleryENSG00000262874
Gene ExpressionC19orf84 [ NCBI-GEO ]   C19orf84 [ EBI - ARRAY_EXPRESS ]   C19orf84 [ SEEK ]   C19orf84 [ MEM ]
Gene Expression Viewer (FireBrowse)C19orf84 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)147646
GTEX Portal (Tissue expression)C19orf84
Human Protein AtlasENSG00000262874-C19orf84 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtI3L1E1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtI3L1E1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProI3L1E1
Splice isoforms : SwissVarI3L1E1
PhosPhoSitePlusI3L1E1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C19orf84
DMDM Disease mutations147646
Blocks (Seattle)C19orf84
SuperfamilyI3L1E1
Human Protein Atlas [tissue]ENSG00000262874-C19orf84 [tissue]
Peptide AtlasI3L1E1
IPIIPI00096608   
Protein Interaction databases
DIP (DOE-UCLA)I3L1E1
IntAct (EBI)I3L1E1
FunCoupENSG00000262874
BioGRIDC19orf84
STRING (EMBL)C19orf84
ZODIACC19orf84
Ontologies - Pathways
QuickGOI3L1E1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC19orf84
Atlas of Cancer Signalling NetworkC19orf84
Wikipedia pathwaysC19orf84
Orthology - Evolution
OrthoDB147646
GeneTree (enSembl)ENSG00000262874
Phylogenetic Trees/Animal Genes : TreeFamC19orf84
HOVERGENI3L1E1
HOGENOMI3L1E1
Homologs : HomoloGeneC19orf84
Homology/Alignments : Family Browser (UCSC)C19orf84
Gene fusions - Rearrangements
Fusion: Tumor Portal C19orf84
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC19orf84 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C19orf84
dbVarC19orf84
ClinVarC19orf84
1000_GenomesC19orf84 
Exome Variant ServerC19orf84
ExAC (Exome Aggregation Consortium)ENSG00000262874
GNOMAD BrowserENSG00000262874
Genetic variants : HAPMAP147646
Genomic Variants (DGV)C19orf84 [DGVbeta]
DECIPHERC19orf84 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC19orf84 
Mutations
ICGC Data PortalC19orf84 
TCGA Data PortalC19orf84 
Broad Tumor PortalC19orf84
OASIS PortalC19orf84 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDC19orf84
BioMutasearch C19orf84
DgiDB (Drug Gene Interaction Database)C19orf84
DoCM (Curated mutations)C19orf84 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C19orf84 (select a term)
intoGenC19orf84
Cancer3DC19orf84(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC19orf84
Genetic Testing Registry C19orf84
NextProtI3L1E1 [Medical]
TSGene147646
GENETestsC19orf84
Target ValidationC19orf84
Huge Navigator C19orf84 [HugePedia]
snp3D : Map Gene to Disease147646
BioCentury BCIQC19orf84
ClinGenC19orf84
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD147646
Chemical/Pharm GKB GenePA166123673
Clinical trialC19orf84
Miscellaneous
canSAR (ICR)C19orf84 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC19orf84
EVEXC19orf84
GoPubMedC19orf84
iHOPC19orf84
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:40:03 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.