Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C1GALT1C1L (C1GALT1-specific chaperone 1 like)

Identity

Other alias-
HGNC (Hugo) C1GALT1C1L
LocusID (NCBI) 728819
Atlas_Id 68467
Location 2p21  [Link to chromosome band 2p21]
Location_base_pair Starts at 43675153 and ends at 43676322 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1GALT1C1L   51617
Cards
Entrez_Gene (NCBI)C1GALT1C1L  728819  C1GALT1-specific chaperone 1 like
Aliases
GeneCards (Weizmann)C1GALT1C1L
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:43675153-43676322 [Contig_View]  C1GALT1C1L [Vega]
TCGA cBioPortalC1GALT1C1L
AceView (NCBI)C1GALT1C1L
Genatlas (Paris)C1GALT1C1L
WikiGenes728819
SOURCE (Princeton)C1GALT1C1L
Genetics Home Reference (NIH)C1GALT1C1L
Genomic and cartography
GoldenPath hg38 (UCSC)C1GALT1C1L  -     chr2:43675153-43676322 -  2p21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1GALT1C1L  -     2p21   [Description]    (hg19-Feb_2009)
EnsemblC1GALT1C1L - 2p21 [CytoView hg19]  C1GALT1C1L - 2p21 [CytoView hg38]
Mapping of homologs : NCBIC1GALT1C1L [Mapview hg19]  C1GALT1C1L [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001101330
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1GALT1C1L
Gene ExpressionC1GALT1C1L [ NCBI-GEO ]   C1GALT1C1L [ EBI - ARRAY_EXPRESS ]   C1GALT1C1L [ SEEK ]   C1GALT1C1L [ MEM ]
Gene Expression Viewer (FireBrowse)C1GALT1C1L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728819
GTEX Portal (Tissue expression)C1GALT1C1L
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DN25   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DN25  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DN25
Splice isoforms : SwissVarP0DN25
PhosPhoSitePlusP0DN25
Domains : Interpro (EBI)C1GALT1C1   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C1GALT1C1L
DMDM Disease mutations728819
Blocks (Seattle)C1GALT1C1L
SuperfamilyP0DN25
Peptide AtlasP0DN25
IPIIPI00104496   
Protein Interaction databases
DIP (DOE-UCLA)P0DN25
IntAct (EBI)P0DN25
BioGRIDC1GALT1C1L
STRING (EMBL)C1GALT1C1L
ZODIACC1GALT1C1L
Ontologies - Pathways
QuickGOP0DN25
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkC1GALT1C1L
Atlas of Cancer Signalling NetworkC1GALT1C1L
Wikipedia pathwaysC1GALT1C1L
Orthology - Evolution
OrthoDB728819
Phylogenetic Trees/Animal Genes : TreeFamC1GALT1C1L
HOVERGENP0DN25
HOGENOMP0DN25
Homologs : HomoloGeneC1GALT1C1L
Homology/Alignments : Family Browser (UCSC)C1GALT1C1L
Gene fusions - Rearrangements
Fusion: Tumor Portal C1GALT1C1L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1GALT1C1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1GALT1C1L
dbVarC1GALT1C1L
ClinVarC1GALT1C1L
1000_GenomesC1GALT1C1L 
Exome Variant ServerC1GALT1C1L
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP728819
Genomic Variants (DGV)C1GALT1C1L [DGVbeta]
DECIPHERC1GALT1C1L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1GALT1C1L 
Mutations
ICGC Data PortalC1GALT1C1L 
TCGA Data PortalC1GALT1C1L 
Broad Tumor PortalC1GALT1C1L
OASIS PortalC1GALT1C1L [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDC1GALT1C1L
BioMutasearch C1GALT1C1L
DgiDB (Drug Gene Interaction Database)C1GALT1C1L
DoCM (Curated mutations)C1GALT1C1L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1GALT1C1L (select a term)
intoGenC1GALT1C1L
Cancer3DC1GALT1C1L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC1GALT1C1L
Genetic Testing Registry C1GALT1C1L
NextProtP0DN25 [Medical]
TSGene728819
GENETestsC1GALT1C1L
Target ValidationC1GALT1C1L
Huge Navigator C1GALT1C1L [HugePedia]
snp3D : Map Gene to Disease728819
BioCentury BCIQC1GALT1C1L
ClinGenC1GALT1C1L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728819
Clinical trialC1GALT1C1L
Miscellaneous
canSAR (ICR)C1GALT1C1L (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1GALT1C1L
EVEXC1GALT1C1L
GoPubMedC1GALT1C1L
iHOPC1GALT1C1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:40:03 CET 2017

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