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C1QL1 (complement component 1, q subcomponent-like 1)

Identity

Alias_namescomplement component 1, q subcomponent-like 1
Alias_symbol (synonym)CRF
C1QRF
C1QTNF14
Other alias
HGNC (Hugo) C1QL1
LocusID (NCBI) 10882
Atlas_Id 61097
Location 17q21.31  [Link to chromosome band 17q21]
Location_base_pair Starts at 43037061 and ends at 43045644 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C1QL1 (17q21.31) / SLC16A5 (17q25.1)EFTUD2 (17q21.31) / C1QL1 (17q21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1QL1   24182
Cards
Entrez_Gene (NCBI)C1QL1  10882  complement component 1, q subcomponent-like 1
AliasesC1QRF; C1QTNF14; CRF
GeneCards (Weizmann)C1QL1
Ensembl hg19 (Hinxton)ENSG00000131094 [Gene_View]  chr17:43037061-43045644 [Contig_View]  C1QL1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000131094 [Gene_View]  chr17:43037061-43045644 [Contig_View]  C1QL1 [Vega]
ICGC DataPortalENSG00000131094
TCGA cBioPortalC1QL1
AceView (NCBI)C1QL1
Genatlas (Paris)C1QL1
WikiGenes10882
SOURCE (Princeton)C1QL1
Genetics Home Reference (NIH)C1QL1
Genomic and cartography
GoldenPath hg19 (UCSC)C1QL1  -     chr17:43037061-43045644 -  17q21.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C1QL1  -     17q21.31   [Description]    (hg38-Dec_2013)
EnsemblC1QL1 - 17q21.31 [CytoView hg19]  C1QL1 - 17q21.31 [CytoView hg38]
Mapping of homologs : NCBIC1QL1 [Mapview hg19]  C1QL1 [Mapview hg38]
OMIM611586   
Gene and transcription
Genbank (Entrez)AF095154 BC008798
RefSeq transcript (Entrez)NM_006688
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)C1QL1
Cluster EST : UnigeneHs.134012 [ NCBI ]
CGAP (NCI)Hs.134012
Alternative Splicing GalleryENSG00000131094
Gene ExpressionC1QL1 [ NCBI-GEO ]   C1QL1 [ EBI - ARRAY_EXPRESS ]   C1QL1 [ SEEK ]   C1QL1 [ MEM ]
Gene Expression Viewer (FireBrowse)C1QL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10882
GTEX Portal (Tissue expression)C1QL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75973   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75973  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75973
Splice isoforms : SwissVarO75973
PhosPhoSitePlusO75973
Domaine pattern : Prosite (Expaxy)C1Q (PS50871)   
Domains : Interpro (EBI)C1q    Collagen    Tumour_necrosis_fac-like_dom   
Domain families : Pfam (Sanger)C1q (PF00386)    Collagen (PF01391)   
Domain families : Pfam (NCBI)pfam00386    pfam01391   
Domain families : Smart (EMBL)C1Q (SM00110)  
Conserved Domain (NCBI)C1QL1
DMDM Disease mutations10882
Blocks (Seattle)C1QL1
SuperfamilyO75973
Human Protein AtlasENSG00000131094
Peptide AtlasO75973
HPRD12712
IPIIPI00027457   
Protein Interaction databases
DIP (DOE-UCLA)O75973
IntAct (EBI)O75973
FunCoupENSG00000131094
BioGRIDC1QL1
STRING (EMBL)C1QL1
ZODIACC1QL1
Ontologies - Pathways
QuickGOO75973
Ontology : AmiGOmolecular_function  cellular_component  extracellular region  collagen trimer  cytoplasm  locomotory behavior  
Ontology : EGO-EBImolecular_function  cellular_component  extracellular region  collagen trimer  cytoplasm  locomotory behavior  
NDEx NetworkC1QL1
Atlas of Cancer Signalling NetworkC1QL1
Wikipedia pathwaysC1QL1
Orthology - Evolution
OrthoDB10882
GeneTree (enSembl)ENSG00000131094
Phylogenetic Trees/Animal Genes : TreeFamC1QL1
HOVERGENO75973
HOGENOMO75973
Homologs : HomoloGeneC1QL1
Homology/Alignments : Family Browser (UCSC)C1QL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1QL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1QL1
dbVarC1QL1
ClinVarC1QL1
1000_GenomesC1QL1 
Exome Variant ServerC1QL1
ExAC (Exome Aggregation Consortium)C1QL1 (select the gene name)
Genetic variants : HAPMAP10882
Genomic Variants (DGV)C1QL1 [DGVbeta]
DECIPHER (Syndromes)17:43037061-43045644  ENSG00000131094
CONAN: Copy Number AnalysisC1QL1 
Mutations
ICGC Data PortalC1QL1 
TCGA Data PortalC1QL1 
Broad Tumor PortalC1QL1
OASIS PortalC1QL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1QL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1QL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1QL1
DgiDB (Drug Gene Interaction Database)C1QL1
DoCM (Curated mutations)C1QL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1QL1 (select a term)
intoGenC1QL1
Cancer3DC1QL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611586   
Orphanet
MedgenC1QL1
Genetic Testing Registry C1QL1
NextProtO75973 [Medical]
TSGene10882
GENETestsC1QL1
Huge Navigator C1QL1 [HugePedia]
snp3D : Map Gene to Disease10882
BioCentury BCIQC1QL1
ClinGenC1QL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10882
Chemical/Pharm GKB GenePA134951551
Clinical trialC1QL1
Miscellaneous
canSAR (ICR)C1QL1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1QL1
EVEXC1QL1
GoPubMedC1QL1
iHOPC1QL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:57:04 CET 2017

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