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C1QL2 (complement C1q like 2)

Identity

Alias_namescomplement component 1, q subcomponent-like 2
Alias_symbol (synonym)CTRP10
C1QTNF10
Other alias
HGNC (Hugo) C1QL2
LocusID (NCBI) 165257
Atlas_Id 61098
Location 2q14.2  [Link to chromosome band 2q14]
Location_base_pair Starts at 119156243 and ends at 119158895 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1QL2   24181
Cards
Entrez_Gene (NCBI)C1QL2  165257  complement C1q like 2
AliasesC1QTNF10; CTRP10
GeneCards (Weizmann)C1QL2
Ensembl hg19 (Hinxton)ENSG00000144119 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000144119 [Gene_View]  chr2:119156243-119158895 [Contig_View]  C1QL2 [Vega]
ICGC DataPortalENSG00000144119
TCGA cBioPortalC1QL2
AceView (NCBI)C1QL2
Genatlas (Paris)C1QL2
WikiGenes165257
SOURCE (Princeton)C1QL2
Genetics Home Reference (NIH)C1QL2
Genomic and cartography
GoldenPath hg38 (UCSC)C1QL2  -     chr2:119156243-119158895 -  2q14.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1QL2  -     2q14.2   [Description]    (hg19-Feb_2009)
EnsemblC1QL2 - 2q14.2 [CytoView hg19]  C1QL2 - 2q14.2 [CytoView hg38]
Mapping of homologs : NCBIC1QL2 [Mapview hg19]  C1QL2 [Mapview hg38]
OMIM614330   
Gene and transcription
Genbank (Entrez)AF525315 BC043189 BC067896 BC142965
RefSeq transcript (Entrez)NM_182528
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1QL2
Cluster EST : UnigeneHs.433493 [ NCBI ]
CGAP (NCI)Hs.433493
Alternative Splicing GalleryENSG00000144119
Gene ExpressionC1QL2 [ NCBI-GEO ]   C1QL2 [ EBI - ARRAY_EXPRESS ]   C1QL2 [ SEEK ]   C1QL2 [ MEM ]
Gene Expression Viewer (FireBrowse)C1QL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)165257
GTEX Portal (Tissue expression)C1QL2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z5L3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z5L3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z5L3
Splice isoforms : SwissVarQ7Z5L3
PhosPhoSitePlusQ7Z5L3
Domaine pattern : Prosite (Expaxy)C1Q (PS50871)   
Domains : Interpro (EBI)C1q_dom    Collagen    Tumour_necrosis_fac-like_dom   
Domain families : Pfam (Sanger)C1q (PF00386)    Collagen (PF01391)   
Domain families : Pfam (NCBI)pfam00386    pfam01391   
Domain families : Smart (EMBL)C1Q (SM00110)  
Conserved Domain (NCBI)C1QL2
DMDM Disease mutations165257
Blocks (Seattle)C1QL2
SuperfamilyQ7Z5L3
Human Protein AtlasENSG00000144119
Peptide AtlasQ7Z5L3
HPRD12713
IPIIPI00376197   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z5L3
IntAct (EBI)Q7Z5L3
FunCoupENSG00000144119
BioGRIDC1QL2
STRING (EMBL)C1QL2
ZODIACC1QL2
Ontologies - Pathways
QuickGOQ7Z5L3
Ontology : AmiGOextracellular region  collagen trimer  identical protein binding  protein oligomerization  
Ontology : EGO-EBIextracellular region  collagen trimer  identical protein binding  protein oligomerization  
NDEx NetworkC1QL2
Atlas of Cancer Signalling NetworkC1QL2
Wikipedia pathwaysC1QL2
Orthology - Evolution
OrthoDB165257
GeneTree (enSembl)ENSG00000144119
Phylogenetic Trees/Animal Genes : TreeFamC1QL2
HOVERGENQ7Z5L3
HOGENOMQ7Z5L3
Homologs : HomoloGeneC1QL2
Homology/Alignments : Family Browser (UCSC)C1QL2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1QL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1QL2
dbVarC1QL2
ClinVarC1QL2
1000_GenomesC1QL2 
Exome Variant ServerC1QL2
ExAC (Exome Aggregation Consortium)C1QL2 (select the gene name)
Genetic variants : HAPMAP165257
Genomic Variants (DGV)C1QL2 [DGVbeta]
DECIPHERC1QL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1QL2 
Mutations
ICGC Data PortalC1QL2 
TCGA Data PortalC1QL2 
Broad Tumor PortalC1QL2
OASIS PortalC1QL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1QL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1QL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1QL2
DgiDB (Drug Gene Interaction Database)C1QL2
DoCM (Curated mutations)C1QL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1QL2 (select a term)
intoGenC1QL2
Cancer3DC1QL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614330   
Orphanet
MedgenC1QL2
Genetic Testing Registry C1QL2
NextProtQ7Z5L3 [Medical]
TSGene165257
GENETestsC1QL2
Huge Navigator C1QL2 [HugePedia]
snp3D : Map Gene to Disease165257
BioCentury BCIQC1QL2
ClinGenC1QL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD165257
Chemical/Pharm GKB GenePA134915960
Clinical trialC1QL2
Miscellaneous
canSAR (ICR)C1QL2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1QL2
EVEXC1QL2
GoPubMedC1QL2
iHOPC1QL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:03:12 CEST 2017

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