Atlas of Genetics and Cytogenetics in Oncology and Haematology

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C1QL3 (complement C1q like 3)

Identity

Alias_namescomplement component 1, q subcomponent-like 3
Alias_symbol (synonym)K100
C1ql
C1QTNF13
CTRP13
Other alias
HGNC (Hugo) C1QL3
LocusID (NCBI) 389941
Atlas_Id 61099
Location 10p13  [Link to chromosome band 10p13]
Location_base_pair Starts at 16513743 and ends at 16522005 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)C1QL3   19359
Cards
Entrez_Gene (NCBI)C1QL3  389941  complement C1q like 3
AliasesC1QTNF13; C1ql; CTRP13; K100
GeneCards (Weizmann)C1QL3
Ensembl hg19 (Hinxton)ENSG00000165985 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165985 [Gene_View]  chr10:16513743-16522005 [Contig_View]  C1QL3 [Vega]
ICGC DataPortalENSG00000165985
TCGA cBioPortalC1QL3
AceView (NCBI)C1QL3
Genatlas (Paris)C1QL3
WikiGenes389941
SOURCE (Princeton)C1QL3
Genetics Home Reference (NIH)C1QL3
Genomic and cartography
GoldenPath hg38 (UCSC)C1QL3  -     chr10:16513743-16522005 -  10p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1QL3  -     10p13   [Description]    (hg19-Feb_2009)
EnsemblC1QL3 - 10p13 [CytoView hg19]  C1QL3 - 10p13 [CytoView hg38]
Mapping of homologs : NCBIC1QL3 [Mapview hg19]  C1QL3 [Mapview hg38]
OMIM615227   
Gene and transcription
Genbank (Entrez)AK094686 BC127716 BC127717 BC160038
RefSeq transcript (Entrez)NM_001010908
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1QL3
Cluster EST : UnigeneHs.745101 [ NCBI ]
CGAP (NCI)Hs.745101
Alternative Splicing GalleryENSG00000165985
Gene ExpressionC1QL3 [ NCBI-GEO ]   C1QL3 [ EBI - ARRAY_EXPRESS ]   C1QL3 [ SEEK ]   C1QL3 [ MEM ]
Gene Expression Viewer (FireBrowse)C1QL3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389941
GTEX Portal (Tissue expression)C1QL3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VWW1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VWW1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VWW1
Splice isoforms : SwissVarQ5VWW1
PhosPhoSitePlusQ5VWW1
Domaine pattern : Prosite (Expaxy)C1Q (PS50871)   
Domains : Interpro (EBI)C1q_dom    Collagen    Tumour_necrosis_fac-like_dom   
Domain families : Pfam (Sanger)C1q (PF00386)    Collagen (PF01391)   
Domain families : Pfam (NCBI)pfam00386    pfam01391   
Domain families : Smart (EMBL)C1Q (SM00110)  
Conserved Domain (NCBI)C1QL3
DMDM Disease mutations389941
Blocks (Seattle)C1QL3
SuperfamilyQ5VWW1
Human Protein AtlasENSG00000165985
Peptide AtlasQ5VWW1
HPRD16632
IPIIPI00552939   IPI00816155   IPI00854882   IPI00939976   
Protein Interaction databases
DIP (DOE-UCLA)Q5VWW1
IntAct (EBI)Q5VWW1
FunCoupENSG00000165985
BioGRIDC1QL3
STRING (EMBL)C1QL3
ZODIACC1QL3
Ontologies - Pathways
QuickGOQ5VWW1
Ontology : AmiGOextracellular region  collagen trimer  regulation of synapse organization  
Ontology : EGO-EBIextracellular region  collagen trimer  regulation of synapse organization  
NDEx NetworkC1QL3
Atlas of Cancer Signalling NetworkC1QL3
Wikipedia pathwaysC1QL3
Orthology - Evolution
OrthoDB389941
GeneTree (enSembl)ENSG00000165985
Phylogenetic Trees/Animal Genes : TreeFamC1QL3
HOVERGENQ5VWW1
HOGENOMQ5VWW1
Homologs : HomoloGeneC1QL3
Homology/Alignments : Family Browser (UCSC)C1QL3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1QL3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1QL3
dbVarC1QL3
ClinVarC1QL3
1000_GenomesC1QL3 
Exome Variant ServerC1QL3
ExAC (Exome Aggregation Consortium)C1QL3 (select the gene name)
Genetic variants : HAPMAP389941
Genomic Variants (DGV)C1QL3 [DGVbeta]
DECIPHERC1QL3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1QL3 
Mutations
ICGC Data PortalC1QL3 
TCGA Data PortalC1QL3 
Broad Tumor PortalC1QL3
OASIS PortalC1QL3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1QL3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1QL3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1QL3
DgiDB (Drug Gene Interaction Database)C1QL3
DoCM (Curated mutations)C1QL3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1QL3 (select a term)
intoGenC1QL3
Cancer3DC1QL3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615227   
Orphanet
MedgenC1QL3
Genetic Testing Registry C1QL3
NextProtQ5VWW1 [Medical]
TSGene389941
GENETestsC1QL3
Target ValidationC1QL3
Huge Navigator C1QL3 [HugePedia]
snp3D : Map Gene to Disease389941
BioCentury BCIQC1QL3
ClinGenC1QL3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389941
Chemical/Pharm GKB GenePA134891919
Clinical trialC1QL3
Miscellaneous
canSAR (ICR)C1QL3 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1QL3
EVEXC1QL3
GoPubMedC1QL3
iHOPC1QL3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:40:57 CEST 2017
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