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C1QTNF1 (C1q and TNF related 1)

Identity

Alias_symbol (synonym)CTRP1
ZSIG37
GIP
FLJ90694
Other alias
HGNC (Hugo) C1QTNF1
LocusID (NCBI) 114897
Atlas_Id 873
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 79024070 and ends at 79049788 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C1QTNF1 (17q25.3) / AFF1 (4q21.3)C1QTNF1 (17q25.3) / C1QTNF1 (17q25.3)C1QTNF1 (17q25.3) / MAGED4B (Xp11.22)
KIAA0100 (17q11.2) / C1QTNF1 (17q25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1QTNF1   14324
Cards
Entrez_Gene (NCBI)C1QTNF1  114897  C1q and TNF related 1
AliasesCTRP1; GIP; ZSIG37
GeneCards (Weizmann)C1QTNF1
Ensembl hg19 (Hinxton)ENSG00000173918 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173918 [Gene_View]  chr17:79024070-79049788 [Contig_View]  C1QTNF1 [Vega]
ICGC DataPortalENSG00000173918
TCGA cBioPortalC1QTNF1
AceView (NCBI)C1QTNF1
Genatlas (Paris)C1QTNF1
WikiGenes114897
SOURCE (Princeton)C1QTNF1
Genetics Home Reference (NIH)C1QTNF1
Genomic and cartography
GoldenPath hg38 (UCSC)C1QTNF1  -     chr17:79024070-79049788 +  17q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1QTNF1  -     17q25.3   [Description]    (hg19-Feb_2009)
EnsemblC1QTNF1 - 17q25.3 [CytoView hg19]  C1QTNF1 - 17q25.3 [CytoView hg38]
Mapping of homologs : NCBIC1QTNF1 [Mapview hg19]  C1QTNF1 [Mapview hg38]
OMIM610365   
Gene and transcription
Genbank (Entrez)AF232905 AF329840 AJ272138 AK055541 AK075175
RefSeq transcript (Entrez)NM_030968 NM_153372 NM_198593 NM_198594
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1QTNF1
Cluster EST : UnigeneHs.741602 [ NCBI ]
CGAP (NCI)Hs.741602
Alternative Splicing GalleryENSG00000173918
Gene ExpressionC1QTNF1 [ NCBI-GEO ]   C1QTNF1 [ EBI - ARRAY_EXPRESS ]   C1QTNF1 [ SEEK ]   C1QTNF1 [ MEM ]
Gene Expression Viewer (FireBrowse)C1QTNF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114897
GTEX Portal (Tissue expression)C1QTNF1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXJ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXJ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXJ1
Splice isoforms : SwissVarQ9BXJ1
PhosPhoSitePlusQ9BXJ1
Domaine pattern : Prosite (Expaxy)C1Q (PS50871)   
Domains : Interpro (EBI)C1q_dom    Collagen    Tumour_necrosis_fac-like_dom   
Domain families : Pfam (Sanger)C1q (PF00386)    Collagen (PF01391)   
Domain families : Pfam (NCBI)pfam00386    pfam01391   
Domain families : Smart (EMBL)C1Q (SM00110)  
Conserved Domain (NCBI)C1QTNF1
DMDM Disease mutations114897
Blocks (Seattle)C1QTNF1
SuperfamilyQ9BXJ1
Human Protein AtlasENSG00000173918
Peptide AtlasQ9BXJ1
IPIIPI01018133   IPI01010107   IPI00394878   IPI00745915   
Protein Interaction databases
DIP (DOE-UCLA)Q9BXJ1
IntAct (EBI)Q9BXJ1
FunCoupENSG00000173918
BioGRIDC1QTNF1
STRING (EMBL)C1QTNF1
ZODIACC1QTNF1
Ontologies - Pathways
QuickGOQ9BXJ1
Ontology : AmiGOprotein binding  collagen binding  collagen trimer  extracellular space  nucleus  cytosol  integral component of plasma membrane  positive regulation of cytosolic calcium ion concentration  negative regulation of platelet activation  positive regulation of gene expression  regulation of glucose metabolic process  positive regulation of MAPK cascade  protein homooligomerization  positive regulation of protein kinase B signaling  protein heterotrimerization  negative regulation of platelet aggregation  positive regulation of aldosterone secretion  
Ontology : EGO-EBIprotein binding  collagen binding  collagen trimer  extracellular space  nucleus  cytosol  integral component of plasma membrane  positive regulation of cytosolic calcium ion concentration  negative regulation of platelet activation  positive regulation of gene expression  regulation of glucose metabolic process  positive regulation of MAPK cascade  protein homooligomerization  positive regulation of protein kinase B signaling  protein heterotrimerization  negative regulation of platelet aggregation  positive regulation of aldosterone secretion  
NDEx NetworkC1QTNF1
Atlas of Cancer Signalling NetworkC1QTNF1
Wikipedia pathwaysC1QTNF1
Orthology - Evolution
OrthoDB114897
GeneTree (enSembl)ENSG00000173918
Phylogenetic Trees/Animal Genes : TreeFamC1QTNF1
HOVERGENQ9BXJ1
HOGENOMQ9BXJ1
Homologs : HomoloGeneC1QTNF1
Homology/Alignments : Family Browser (UCSC)C1QTNF1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1QTNF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1QTNF1
dbVarC1QTNF1
ClinVarC1QTNF1
1000_GenomesC1QTNF1 
Exome Variant ServerC1QTNF1
ExAC (Exome Aggregation Consortium)C1QTNF1 (select the gene name)
Genetic variants : HAPMAP114897
Genomic Variants (DGV)C1QTNF1 [DGVbeta]
DECIPHERC1QTNF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1QTNF1 
Mutations
ICGC Data PortalC1QTNF1 
TCGA Data PortalC1QTNF1 
Broad Tumor PortalC1QTNF1
OASIS PortalC1QTNF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1QTNF1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1QTNF1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1QTNF1
DgiDB (Drug Gene Interaction Database)C1QTNF1
DoCM (Curated mutations)C1QTNF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1QTNF1 (select a term)
intoGenC1QTNF1
Cancer3DC1QTNF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610365   
Orphanet
MedgenC1QTNF1
Genetic Testing Registry C1QTNF1
NextProtQ9BXJ1 [Medical]
TSGene114897
GENETestsC1QTNF1
Target ValidationC1QTNF1
Huge Navigator C1QTNF1 [HugePedia]
snp3D : Map Gene to Disease114897
BioCentury BCIQC1QTNF1
ClinGenC1QTNF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114897
Chemical/Pharm GKB GenePA25628
Clinical trialC1QTNF1
Miscellaneous
canSAR (ICR)C1QTNF1 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1QTNF1
EVEXC1QTNF1
GoPubMedC1QTNF1
iHOPC1QTNF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 18:59:52 CEST 2017

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