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C1QTNF12 (C1q and TNF related 12)

Identity

Other aliasC1QDC2
CTRP12
FAM132A
HGNC (Hugo) C1QTNF12
LocusID (NCBI) 388581
Atlas_Id 56867
Location 1p36.33  [Link to chromosome band 1p36]
Location_base_pair Starts at 1242446 and ends at 1246722 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1QTNF12   32308
Cards
Entrez_Gene (NCBI)C1QTNF12  388581  C1q and TNF related 12
AliasesC1QDC2; CTRP12; FAM132A
GeneCards (Weizmann)C1QTNF12
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:1242446-1246722 [Contig_View]  C1QTNF12 [Vega]
TCGA cBioPortalC1QTNF12
AceView (NCBI)C1QTNF12
Genatlas (Paris)C1QTNF12
WikiGenes388581
SOURCE (Princeton)C1QTNF12
Genetics Home Reference (NIH)C1QTNF12
Genomic and cartography
GoldenPath hg38 (UCSC)C1QTNF12  -     chr1:1242446-1246722 -  1p36.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1QTNF12  -     1p36.33   [Description]    (hg19-Feb_2009)
EnsemblC1QTNF12 - 1p36.33 [CytoView hg19]  C1QTNF12 - 1p36.33 [CytoView hg38]
Mapping of homologs : NCBIC1QTNF12 [Mapview hg19]  C1QTNF12 [Mapview hg38]
OMIM616593   
Gene and transcription
Genbank (Entrez)AW873053 BC089443
RefSeq transcript (Entrez)NM_001014980
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1QTNF12
Cluster EST : UnigeneHs.197613 [ NCBI ]
CGAP (NCI)Hs.197613
Gene ExpressionC1QTNF12 [ NCBI-GEO ]   C1QTNF12 [ EBI - ARRAY_EXPRESS ]   C1QTNF12 [ SEEK ]   C1QTNF12 [ MEM ]
Gene Expression Viewer (FireBrowse)C1QTNF12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388581
GTEX Portal (Tissue expression)C1QTNF12
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T7M4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T7M4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T7M4
Splice isoforms : SwissVarQ5T7M4
PhosPhoSitePlusQ5T7M4
Domaine pattern : Prosite (Expaxy)C1Q (PS50871)   
Domains : Interpro (EBI)C1q_dom    Tumour_necrosis_fac-like_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C1QTNF12
DMDM Disease mutations388581
Blocks (Seattle)C1QTNF12
SuperfamilyQ5T7M4
Peptide AtlasQ5T7M4
IPIIPI00373976   
Protein Interaction databases
DIP (DOE-UCLA)Q5T7M4
IntAct (EBI)Q5T7M4
BioGRIDC1QTNF12
STRING (EMBL)C1QTNF12
ZODIACC1QTNF12
Ontologies - Pathways
QuickGOQ5T7M4
Ontology : AmiGOhormone activity  extracellular region  extracellular space  positive regulation of insulin secretion involved in cellular response to glucose stimulus  negative regulation of gluconeogenesis  regulation of glucose import  positive regulation of glucose import  positive regulation of insulin receptor signaling pathway  negative regulation of inflammatory response  positive regulation of protein kinase B signaling  
Ontology : EGO-EBIhormone activity  extracellular region  extracellular space  positive regulation of insulin secretion involved in cellular response to glucose stimulus  negative regulation of gluconeogenesis  regulation of glucose import  positive regulation of glucose import  positive regulation of insulin receptor signaling pathway  negative regulation of inflammatory response  positive regulation of protein kinase B signaling  
NDEx NetworkC1QTNF12
Atlas of Cancer Signalling NetworkC1QTNF12
Wikipedia pathwaysC1QTNF12
Orthology - Evolution
OrthoDB388581
Phylogenetic Trees/Animal Genes : TreeFamC1QTNF12
HOVERGENQ5T7M4
HOGENOMQ5T7M4
Homologs : HomoloGeneC1QTNF12
Homology/Alignments : Family Browser (UCSC)C1QTNF12
Gene fusions - Rearrangements
Fusion : MitelmanRLF/FAM132A [1p34.2/1p36.33]  [t(1;1)(p34;p36)]  
Tumor Fusion PortalC1QTNF12
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1QTNF12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1QTNF12
dbVarC1QTNF12
ClinVarC1QTNF12
1000_GenomesC1QTNF12 
Exome Variant ServerC1QTNF12
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP388581
Genomic Variants (DGV)C1QTNF12 [DGVbeta]
DECIPHERC1QTNF12 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1QTNF12 
Mutations
ICGC Data PortalC1QTNF12 
TCGA Data PortalC1QTNF12 
Broad Tumor PortalC1QTNF12
OASIS PortalC1QTNF12 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDC1QTNF12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1QTNF12
DgiDB (Drug Gene Interaction Database)C1QTNF12
DoCM (Curated mutations)C1QTNF12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1QTNF12 (select a term)
intoGenC1QTNF12
Cancer3DC1QTNF12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616593   
Orphanet
DisGeNETC1QTNF12
MedgenC1QTNF12
Genetic Testing Registry C1QTNF12
NextProtQ5T7M4 [Medical]
TSGene388581
GENETestsC1QTNF12
Target ValidationC1QTNF12
Huge Navigator C1QTNF12 [HugePedia]
snp3D : Map Gene to Disease388581
BioCentury BCIQC1QTNF12
ClinGenC1QTNF12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388581
Chemical/Pharm GKB GenePA162386101
Clinical trialC1QTNF12
Miscellaneous
canSAR (ICR)C1QTNF12 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1QTNF12
EVEXC1QTNF12
GoPubMedC1QTNF12
iHOPC1QTNF12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:28:48 CET 2017

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