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C1QTNF2 (C1q and TNF related 2)

Identity

Alias_symbol (synonym)CTRP2
Other aliaszacrp2
HGNC (Hugo) C1QTNF2
LocusID (NCBI) 114898
Atlas_Id 874
Location 5q33.3  [Link to chromosome band 5q33]
Location_base_pair Starts at 160347768 and ends at 160370641 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1QTNF2   14325
Cards
Entrez_Gene (NCBI)C1QTNF2  114898  C1q and TNF related 2
AliasesCTRP2; zacrp2
GeneCards (Weizmann)C1QTNF2
Ensembl hg19 (Hinxton)ENSG00000145861 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000145861 [Gene_View]  ENSG00000145861 [Sequence]  chr5:160347768-160370641 [Contig_View]  C1QTNF2 [Vega]
ICGC DataPortalENSG00000145861
TCGA cBioPortalC1QTNF2
AceView (NCBI)C1QTNF2
Genatlas (Paris)C1QTNF2
WikiGenes114898
SOURCE (Princeton)C1QTNF2
Genetics Home Reference (NIH)C1QTNF2
Genomic and cartography
GoldenPath hg38 (UCSC)C1QTNF2  -     chr5:160347768-160370641 -  5q33.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1QTNF2  -     5q33.3   [Description]    (hg19-Feb_2009)
EnsemblC1QTNF2 - 5q33.3 [CytoView hg19]  C1QTNF2 - 5q33.3 [CytoView hg38]
Mapping of homologs : NCBIC1QTNF2 [Mapview hg19]  C1QTNF2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF329836 AY358839 BC011699 BC054506
RefSeq transcript (Entrez)NM_001366504 NM_031908
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1QTNF2
Cluster EST : UnigeneHs.110062 [ NCBI ]
CGAP (NCI)Hs.110062
Alternative Splicing GalleryENSG00000145861
Gene ExpressionC1QTNF2 [ NCBI-GEO ]   C1QTNF2 [ EBI - ARRAY_EXPRESS ]   C1QTNF2 [ SEEK ]   C1QTNF2 [ MEM ]
Gene Expression Viewer (FireBrowse)C1QTNF2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114898
GTEX Portal (Tissue expression)C1QTNF2
Human Protein AtlasENSG00000145861-C1QTNF2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXJ5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXJ5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXJ5
Splice isoforms : SwissVarQ9BXJ5
PhosPhoSitePlusQ9BXJ5
Domaine pattern : Prosite (Expaxy)C1Q (PS50871)   
Domains : Interpro (EBI)C1q_dom    Collagen    Tumour_necrosis_fac-like_dom   
Domain families : Pfam (Sanger)C1q (PF00386)    Collagen (PF01391)   
Domain families : Pfam (NCBI)pfam00386    pfam01391   
Domain families : Smart (EMBL)C1Q (SM00110)  
Conserved Domain (NCBI)C1QTNF2
DMDM Disease mutations114898
Blocks (Seattle)C1QTNF2
SuperfamilyQ9BXJ5
Human Protein Atlas [tissue]ENSG00000145861-C1QTNF2 [tissue]
Peptide AtlasQ9BXJ5
HPRD12715
IPIIPI00011093   
Protein Interaction databases
DIP (DOE-UCLA)Q9BXJ5
IntAct (EBI)Q9BXJ5
FunCoupENSG00000145861
BioGRIDC1QTNF2
STRING (EMBL)C1QTNF2
ZODIACC1QTNF2
Ontologies - Pathways
QuickGOQ9BXJ5
Ontology : AmiGOactivation of MAPK activity  signaling receptor binding  protein binding  collagen trimer  extracellular space  identical protein binding  positive regulation of glycogen biosynthetic process  positive regulation of fatty acid oxidation  positive regulation of glucose import  protein homooligomerization  protein heterotrimerization  
Ontology : EGO-EBIactivation of MAPK activity  signaling receptor binding  protein binding  collagen trimer  extracellular space  identical protein binding  positive regulation of glycogen biosynthetic process  positive regulation of fatty acid oxidation  positive regulation of glucose import  protein homooligomerization  protein heterotrimerization  
NDEx NetworkC1QTNF2
Atlas of Cancer Signalling NetworkC1QTNF2
Wikipedia pathwaysC1QTNF2
Orthology - Evolution
OrthoDB114898
GeneTree (enSembl)ENSG00000145861
Phylogenetic Trees/Animal Genes : TreeFamC1QTNF2
HOVERGENQ9BXJ5
HOGENOMQ9BXJ5
Homologs : HomoloGeneC1QTNF2
Homology/Alignments : Family Browser (UCSC)C1QTNF2
Gene fusions - Rearrangements
Fusion : QuiverC1QTNF2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1QTNF2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1QTNF2
dbVarC1QTNF2
ClinVarC1QTNF2
1000_GenomesC1QTNF2 
Exome Variant ServerC1QTNF2
ExAC (Exome Aggregation Consortium)ENSG00000145861
GNOMAD BrowserENSG00000145861
Varsome BrowserC1QTNF2
Genetic variants : HAPMAP114898
Genomic Variants (DGV)C1QTNF2 [DGVbeta]
DECIPHERC1QTNF2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1QTNF2 
Mutations
ICGC Data PortalC1QTNF2 
TCGA Data PortalC1QTNF2 
Broad Tumor PortalC1QTNF2
OASIS PortalC1QTNF2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1QTNF2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1QTNF2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1QTNF2
DgiDB (Drug Gene Interaction Database)C1QTNF2
DoCM (Curated mutations)C1QTNF2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1QTNF2 (select a term)
intoGenC1QTNF2
Cancer3DC1QTNF2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC1QTNF2
MedgenC1QTNF2
Genetic Testing Registry C1QTNF2
NextProtQ9BXJ5 [Medical]
TSGene114898
GENETestsC1QTNF2
Target ValidationC1QTNF2
Huge Navigator C1QTNF2 [HugePedia]
snp3D : Map Gene to Disease114898
BioCentury BCIQC1QTNF2
ClinGenC1QTNF2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114898
Chemical/Pharm GKB GenePA25629
Clinical trialC1QTNF2
Miscellaneous
canSAR (ICR)C1QTNF2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1QTNF2
EVEXC1QTNF2
GoPubMedC1QTNF2
iHOPC1QTNF2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 10:54:55 CET 2018

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