Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C1QTNF3-AMACR (C1QTNF3-AMACR readthrough (NMD candidate))

Identity

Other alias-
HGNC (Hugo) C1QTNF3-AMACR
LocusID (NCBI) 100534612
Atlas_Id 61102
Location 5p13.2  [Link to chromosome band 5p13]
Location_base_pair Starts at 33986986 and ends at 34124528 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1QTNF3-AMACR   49198
Cards
Entrez_Gene (NCBI)C1QTNF3-AMACR  100534612  C1QTNF3-AMACR readthrough (NMD candidate)
Aliases
GeneCards (Weizmann)C1QTNF3-AMACR
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:33986986-34124528 [Contig_View]  C1QTNF3-AMACR [Vega]
TCGA cBioPortalC1QTNF3-AMACR
AceView (NCBI)C1QTNF3-AMACR
Genatlas (Paris)C1QTNF3-AMACR
WikiGenes100534612
SOURCE (Princeton)C1QTNF3-AMACR
Genetics Home Reference (NIH)C1QTNF3-AMACR
Genomic and cartography
GoldenPath hg38 (UCSC)C1QTNF3-AMACR  -     chr5:33986986-34124528 -  5p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1QTNF3-AMACR  -     5p13.2   [Description]    (hg19-Feb_2009)
EnsemblC1QTNF3-AMACR - 5p13.2 [CytoView hg19]  C1QTNF3-AMACR - 5p13.2 [CytoView hg38]
Mapping of homologs : NCBIC1QTNF3-AMACR [Mapview hg19]  C1QTNF3-AMACR [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB209261
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1QTNF3-AMACR
Cluster EST : UnigeneHs.171929 [ NCBI ]
CGAP (NCI)Hs.171929
Gene ExpressionC1QTNF3-AMACR [ NCBI-GEO ]   C1QTNF3-AMACR [ EBI - ARRAY_EXPRESS ]   C1QTNF3-AMACR [ SEEK ]   C1QTNF3-AMACR [ MEM ]
Gene Expression Viewer (FireBrowse)C1QTNF3-AMACR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100534612
GTEX Portal (Tissue expression)C1QTNF3-AMACR
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C1QTNF3-AMACR
DMDM Disease mutations100534612
Blocks (Seattle)C1QTNF3-AMACR
IPIIPI00008860   IPI00903313   IPI00425976   IPI00742875   IPI00643667   
Protein Interaction databases
BioGRIDC1QTNF3-AMACR
STRING (EMBL)C1QTNF3-AMACR
ZODIACC1QTNF3-AMACR
Ontologies - Pathways
Huge Navigator C1QTNF3-AMACR [HugePedia]
snp3D : Map Gene to Disease100534612
BioCentury BCIQC1QTNF3-AMACR
ClinGenC1QTNF3-AMACR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100534612
Clinical trialC1QTNF3-AMACR
Miscellaneous
canSAR (ICR)C1QTNF3-AMACR (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1QTNF3-AMACR
EVEXC1QTNF3-AMACR
GoPubMedC1QTNF3-AMACR
iHOPC1QTNF3-AMACR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 19:21:23 CET 2017

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