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C1QTNF3 (C1q and TNF related 3)

Identity

Alias_symbol (synonym)CTRP3
Cors
Corcs
2310005P21Rik
Cors-26
Other aliasC1ATNF3
CORCS
CORS
CORS-26
CORS26
HGNC (Hugo) C1QTNF3
LocusID (NCBI) 114899
Atlas_Id 875
Location 5p13.2  [Link to chromosome band 5p13]
Location_base_pair Starts at 34017858 and ends at 34043266 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ADAMTS12 (5p13.3) / C1QTNF3 (5p13.2)C1QTNF3 (5p13.2) / AMACR (5p13.2)ADAMTS12 5p13.3 / C1QTNF3 5p13.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1QTNF3   14326
Cards
Entrez_Gene (NCBI)C1QTNF3  114899  C1q and TNF related 3
AliasesC1ATNF3; CORCS; CORS; CORS-26; 
CORS26; CTRP3
GeneCards (Weizmann)C1QTNF3
Ensembl hg19 (Hinxton)ENSG00000082196 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000082196 [Gene_View]  chr5:34017858-34043266 [Contig_View]  C1QTNF3 [Vega]
ICGC DataPortalENSG00000082196
TCGA cBioPortalC1QTNF3
AceView (NCBI)C1QTNF3
Genatlas (Paris)C1QTNF3
WikiGenes114899
SOURCE (Princeton)C1QTNF3
Genetics Home Reference (NIH)C1QTNF3
Genomic and cartography
GoldenPath hg38 (UCSC)C1QTNF3  -     chr5:34017858-34043266 -  5p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1QTNF3  -     5p13.2   [Description]    (hg19-Feb_2009)
EnsemblC1QTNF3 - 5p13.2 [CytoView hg19]  C1QTNF3 - 5p13.2 [CytoView hg38]
Mapping of homologs : NCBIC1QTNF3 [Mapview hg19]  C1QTNF3 [Mapview hg38]
OMIM612045   
Gene and transcription
Genbank (Entrez)AF173888 AF326976 AF329837 AK075533 AK094895
RefSeq transcript (Entrez)NM_030945 NM_181435
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1QTNF3
Cluster EST : UnigeneHs.171929 [ NCBI ]
CGAP (NCI)Hs.171929
Alternative Splicing GalleryENSG00000082196
Gene ExpressionC1QTNF3 [ NCBI-GEO ]   C1QTNF3 [ EBI - ARRAY_EXPRESS ]   C1QTNF3 [ SEEK ]   C1QTNF3 [ MEM ]
Gene Expression Viewer (FireBrowse)C1QTNF3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114899
GTEX Portal (Tissue expression)C1QTNF3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXJ4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXJ4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXJ4
Splice isoforms : SwissVarQ9BXJ4
PhosPhoSitePlusQ9BXJ4
Domaine pattern : Prosite (Expaxy)C1Q (PS50871)   
Domains : Interpro (EBI)C1q_dom    Collagen    Tumour_necrosis_fac-like_dom   
Domain families : Pfam (Sanger)C1q (PF00386)    Collagen (PF01391)   
Domain families : Pfam (NCBI)pfam00386    pfam01391   
Domain families : Smart (EMBL)C1Q (SM00110)  
Conserved Domain (NCBI)C1QTNF3
DMDM Disease mutations114899
Blocks (Seattle)C1QTNF3
SuperfamilyQ9BXJ4
Human Protein AtlasENSG00000082196
Peptide AtlasQ9BXJ4
HPRD12716
Protein Interaction databases
DIP (DOE-UCLA)Q9BXJ4
IntAct (EBI)Q9BXJ4
FunCoupENSG00000082196
BioGRIDC1QTNF3
STRING (EMBL)C1QTNF3
ZODIACC1QTNF3
Ontologies - Pathways
QuickGOQ9BXJ4
Ontology : AmiGOmolecular_function  collagen trimer  extracellular space  membrane  cellular triglyceride homeostasis  negative regulation of NF-kappaB import into nucleus  fat cell differentiation  negative regulation of gluconeogenesis  positive regulation of cytokine secretion  negative regulation of inflammatory response  extracellular exosome  positive regulation of adiponectin secretion  protein trimerization  negative regulation of monocyte chemotactic protein-1 production  negative regulation of interleukin-6 secretion  
Ontology : EGO-EBImolecular_function  collagen trimer  extracellular space  membrane  cellular triglyceride homeostasis  negative regulation of NF-kappaB import into nucleus  fat cell differentiation  negative regulation of gluconeogenesis  positive regulation of cytokine secretion  negative regulation of inflammatory response  extracellular exosome  positive regulation of adiponectin secretion  protein trimerization  negative regulation of monocyte chemotactic protein-1 production  negative regulation of interleukin-6 secretion  
NDEx NetworkC1QTNF3
Atlas of Cancer Signalling NetworkC1QTNF3
Wikipedia pathwaysC1QTNF3
Orthology - Evolution
OrthoDB114899
GeneTree (enSembl)ENSG00000082196
Phylogenetic Trees/Animal Genes : TreeFamC1QTNF3
HOVERGENQ9BXJ4
HOGENOMQ9BXJ4
Homologs : HomoloGeneC1QTNF3
Homology/Alignments : Family Browser (UCSC)C1QTNF3
Gene fusions - Rearrangements
Fusion : MitelmanADAMTS12/C1QTNF3 [5p13.3/5p13.2]  [t(5;5)(p13;p13)]  
Fusion: TCGAADAMTS12 5p13.3 C1QTNF3 5p13.2 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1QTNF3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1QTNF3
dbVarC1QTNF3
ClinVarC1QTNF3
1000_GenomesC1QTNF3 
Exome Variant ServerC1QTNF3
ExAC (Exome Aggregation Consortium)C1QTNF3 (select the gene name)
Genetic variants : HAPMAP114899
Genomic Variants (DGV)C1QTNF3 [DGVbeta]
DECIPHERC1QTNF3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1QTNF3 
Mutations
ICGC Data PortalC1QTNF3 
TCGA Data PortalC1QTNF3 
Broad Tumor PortalC1QTNF3
OASIS PortalC1QTNF3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1QTNF3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1QTNF3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch C1QTNF3
DgiDB (Drug Gene Interaction Database)C1QTNF3
DoCM (Curated mutations)C1QTNF3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1QTNF3 (select a term)
intoGenC1QTNF3
Cancer3DC1QTNF3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612045   
Orphanet
MedgenC1QTNF3
Genetic Testing Registry C1QTNF3
NextProtQ9BXJ4 [Medical]
TSGene114899
GENETestsC1QTNF3
Target ValidationC1QTNF3
Huge Navigator C1QTNF3 [HugePedia]
snp3D : Map Gene to Disease114899
BioCentury BCIQC1QTNF3
ClinGenC1QTNF3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114899
Chemical/Pharm GKB GenePA25630
Clinical trialC1QTNF3
Miscellaneous
canSAR (ICR)C1QTNF3 (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1QTNF3
EVEXC1QTNF3
GoPubMedC1QTNF3
iHOPC1QTNF3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:26:07 CEST 2017

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