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C1QTNF4 (C1q and TNF related 4)

Identity

Alias_symbol (synonym)CTRP4
ZACRP4
Other alias
HGNC (Hugo) C1QTNF4
LocusID (NCBI) 114900
Atlas_Id 876
Location 11p11.2  [Link to chromosome band 11p11]
Location_base_pair Starts at 47589664 and ends at 47594409 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1QTNF4   14346
Cards
Entrez_Gene (NCBI)C1QTNF4  114900  C1q and TNF related 4
AliasesCTRP4; ZACRP4
GeneCards (Weizmann)C1QTNF4
Ensembl hg19 (Hinxton)ENSG00000172247 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172247 [Gene_View]  chr11:47589664-47594409 [Contig_View]  C1QTNF4 [Vega]
ICGC DataPortalENSG00000172247
TCGA cBioPortalC1QTNF4
AceView (NCBI)C1QTNF4
Genatlas (Paris)C1QTNF4
WikiGenes114900
SOURCE (Princeton)C1QTNF4
Genetics Home Reference (NIH)C1QTNF4
Genomic and cartography
GoldenPath hg38 (UCSC)C1QTNF4  -     chr11:47589664-47594409 -  11p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1QTNF4  -     11p11.2   [Description]    (hg19-Feb_2009)
EnsemblC1QTNF4 - 11p11.2 [CytoView hg19]  C1QTNF4 - 11p11.2 [CytoView hg38]
Mapping of homologs : NCBIC1QTNF4 [Mapview hg19]  C1QTNF4 [Mapview hg38]
OMIM614911   
Gene and transcription
Genbank (Entrez)AF329838 BC035628 BI756346
RefSeq transcript (Entrez)NM_031909
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1QTNF4
Cluster EST : UnigeneHs.662633 [ NCBI ]
CGAP (NCI)Hs.662633
Alternative Splicing GalleryENSG00000172247
Gene ExpressionC1QTNF4 [ NCBI-GEO ]   C1QTNF4 [ EBI - ARRAY_EXPRESS ]   C1QTNF4 [ SEEK ]   C1QTNF4 [ MEM ]
Gene Expression Viewer (FireBrowse)C1QTNF4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114900
GTEX Portal (Tissue expression)C1QTNF4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXJ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXJ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXJ3
Splice isoforms : SwissVarQ9BXJ3
PhosPhoSitePlusQ9BXJ3
Domaine pattern : Prosite (Expaxy)C1Q (PS50871)   
Domains : Interpro (EBI)C1q_dom    Tumour_necrosis_fac-like_dom   
Domain families : Pfam (Sanger)C1q (PF00386)   
Domain families : Pfam (NCBI)pfam00386   
Domain families : Smart (EMBL)C1Q (SM00110)  
Conserved Domain (NCBI)C1QTNF4
DMDM Disease mutations114900
Blocks (Seattle)C1QTNF4
SuperfamilyQ9BXJ3
Human Protein AtlasENSG00000172247
Peptide AtlasQ9BXJ3
HPRD12717
IPIIPI00011094   IPI00978227   
Protein Interaction databases
DIP (DOE-UCLA)Q9BXJ3
IntAct (EBI)Q9BXJ3
FunCoupENSG00000172247
BioGRIDC1QTNF4
STRING (EMBL)C1QTNF4
ZODIACC1QTNF4
Ontologies - Pathways
QuickGOQ9BXJ3
Ontology : AmiGOcytokine activity  extracellular space  
Ontology : EGO-EBIcytokine activity  extracellular space  
NDEx NetworkC1QTNF4
Atlas of Cancer Signalling NetworkC1QTNF4
Wikipedia pathwaysC1QTNF4
Orthology - Evolution
OrthoDB114900
GeneTree (enSembl)ENSG00000172247
Phylogenetic Trees/Animal Genes : TreeFamC1QTNF4
HOVERGENQ9BXJ3
HOGENOMQ9BXJ3
Homologs : HomoloGeneC1QTNF4
Homology/Alignments : Family Browser (UCSC)C1QTNF4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1QTNF4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1QTNF4
dbVarC1QTNF4
ClinVarC1QTNF4
1000_GenomesC1QTNF4 
Exome Variant ServerC1QTNF4
ExAC (Exome Aggregation Consortium)C1QTNF4 (select the gene name)
Genetic variants : HAPMAP114900
Genomic Variants (DGV)C1QTNF4 [DGVbeta]
DECIPHERC1QTNF4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1QTNF4 
Mutations
ICGC Data PortalC1QTNF4 
TCGA Data PortalC1QTNF4 
Broad Tumor PortalC1QTNF4
OASIS PortalC1QTNF4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1QTNF4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1QTNF4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1QTNF4
DgiDB (Drug Gene Interaction Database)C1QTNF4
DoCM (Curated mutations)C1QTNF4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1QTNF4 (select a term)
intoGenC1QTNF4
Cancer3DC1QTNF4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614911   
Orphanet
MedgenC1QTNF4
Genetic Testing Registry C1QTNF4
NextProtQ9BXJ3 [Medical]
TSGene114900
GENETestsC1QTNF4
Target ValidationC1QTNF4
Huge Navigator C1QTNF4 [HugePedia]
snp3D : Map Gene to Disease114900
BioCentury BCIQC1QTNF4
ClinGenC1QTNF4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114900
Chemical/Pharm GKB GenePA25631
Clinical trialC1QTNF4
Miscellaneous
canSAR (ICR)C1QTNF4 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1QTNF4
EVEXC1QTNF4
GoPubMedC1QTNF4
iHOPC1QTNF4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:26:07 CEST 2017

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