Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C1QTNF5 (C1q and TNF related 5)

Identity

Alias_namesC1q and tumor necrosis factor related protein 5
Alias_symbol (synonym)CTRP5
DKFZp586B0621
LORD
Other aliasMFRP
HGNC (Hugo) C1QTNF5
LocusID (NCBI) 114902
Atlas_Id 877
Location 11q23.3  [Link to chromosome band 11q23]
Location_base_pair Starts at 119338934 and ends at 119346673 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1QTNF5   14344
Cards
Entrez_Gene (NCBI)C1QTNF5  114902  C1q and TNF related 5
AliasesCTRP5; MFRP
GeneCards (Weizmann)C1QTNF5
Ensembl hg19 (Hinxton)ENSG00000223953 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000223953 [Gene_View]  ENSG00000223953 [Sequence]  chr11:119338934-119346673 [Contig_View]  C1QTNF5 [Vega]
ICGC DataPortalENSG00000223953
TCGA cBioPortalC1QTNF5
AceView (NCBI)C1QTNF5
Genatlas (Paris)C1QTNF5
WikiGenes114902
SOURCE (Princeton)C1QTNF5
Genetics Home Reference (NIH)C1QTNF5
Genomic and cartography
GoldenPath hg38 (UCSC)C1QTNF5  -     chr11:119338934-119346673 -  11q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1QTNF5  -     11q23.3   [Description]    (hg19-Feb_2009)
GoldenPathC1QTNF5 - 11q23.3 [CytoView hg19]  C1QTNF5 - 11q23.3 [CytoView hg38]
ImmunoBaseENSG00000223953
Mapping of homologs : NCBIC1QTNF5 [Mapview hg19]  C1QTNF5 [Mapview hg38]
OMIM605670   608752   
Gene and transcription
Genbank (Entrez)AB055505 AF086482 AF329841 AJ862823 AK055132
RefSeq transcript (Entrez)NM_001278431 NM_015645
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1QTNF5
Cluster EST : UnigeneHs.632102 [ NCBI ]
CGAP (NCI)Hs.632102
Alternative Splicing GalleryENSG00000223953
Gene ExpressionC1QTNF5 [ NCBI-GEO ]   C1QTNF5 [ EBI - ARRAY_EXPRESS ]   C1QTNF5 [ SEEK ]   C1QTNF5 [ MEM ]
Gene Expression Viewer (FireBrowse)C1QTNF5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114902
GTEX Portal (Tissue expression)C1QTNF5
Human Protein AtlasENSG00000223953-C1QTNF5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXJ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXJ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXJ0
Splice isoforms : SwissVarQ9BXJ0
PhosPhoSitePlusQ9BXJ0
Domaine pattern : Prosite (Expaxy)C1Q (PS50871)   
Domains : Interpro (EBI)C1q_dom    Collagen    Tumour_necrosis_fac-like_dom   
Domain families : Pfam (Sanger)C1q (PF00386)    Collagen (PF01391)   
Domain families : Pfam (NCBI)pfam00386    pfam01391   
Domain families : Smart (EMBL)C1Q (SM00110)  
Conserved Domain (NCBI)C1QTNF5
DMDM Disease mutations114902
Blocks (Seattle)C1QTNF5
PDB (RSDB)4F3J    4NN0   
PDB Europe4F3J    4NN0   
PDB (PDBSum)4F3J    4NN0   
PDB (IMB)4F3J    4NN0   
Structural Biology KnowledgeBase4F3J    4NN0   
SCOP (Structural Classification of Proteins)4F3J    4NN0   
CATH (Classification of proteins structures)4F3J    4NN0   
SuperfamilyQ9BXJ0
Human Protein Atlas [tissue]ENSG00000223953-C1QTNF5 [tissue]
Peptide AtlasQ9BXJ0
HPRD10575
IPIIPI00024105   
Protein Interaction databases
DIP (DOE-UCLA)Q9BXJ0
IntAct (EBI)Q9BXJ0
FunCoupENSG00000223953
BioGRIDC1QTNF5
STRING (EMBL)C1QTNF5
ZODIACC1QTNF5
Ontologies - Pathways
QuickGOQ9BXJ0
Ontology : AmiGOcollagen trimer  extracellular space  plasma membrane  bicellular tight junction  protein secretion  apical plasma membrane  lateral plasma membrane  transport vesicle  identical protein binding  cell projection  inner ear development  protein trimerization  
Ontology : EGO-EBIcollagen trimer  extracellular space  plasma membrane  bicellular tight junction  protein secretion  apical plasma membrane  lateral plasma membrane  transport vesicle  identical protein binding  cell projection  inner ear development  protein trimerization  
NDEx NetworkC1QTNF5
Atlas of Cancer Signalling NetworkC1QTNF5
Wikipedia pathwaysC1QTNF5
Orthology - Evolution
OrthoDB114902
GeneTree (enSembl)ENSG00000223953
Phylogenetic Trees/Animal Genes : TreeFamC1QTNF5
HOGENOMQ9BXJ0
Homologs : HomoloGeneC1QTNF5
Homology/Alignments : Family Browser (UCSC)C1QTNF5
Gene fusions - Rearrangements
Fusion : QuiverC1QTNF5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1QTNF5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1QTNF5
dbVarC1QTNF5
ClinVarC1QTNF5
1000_GenomesC1QTNF5 
Exome Variant ServerC1QTNF5
ExAC (Exome Aggregation Consortium)ENSG00000223953
GNOMAD BrowserENSG00000223953
Varsome BrowserC1QTNF5
Genetic variants : HAPMAP114902
Genomic Variants (DGV)C1QTNF5 [DGVbeta]
DECIPHERC1QTNF5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1QTNF5 
Mutations
ICGC Data PortalC1QTNF5 
TCGA Data PortalC1QTNF5 
Broad Tumor PortalC1QTNF5
OASIS PortalC1QTNF5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1QTNF5  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DC1QTNF5
Mutations and Diseases : HGMDC1QTNF5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
BioMutasearch C1QTNF5
DgiDB (Drug Gene Interaction Database)C1QTNF5
DoCM (Curated mutations)C1QTNF5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1QTNF5 (select a term)
intoGenC1QTNF5
Cancer3DC1QTNF5(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605670    608752   
Orphanet10902   
DisGeNETC1QTNF5
MedgenC1QTNF5
Genetic Testing Registry C1QTNF5
NextProtQ9BXJ0 [Medical]
TSGene114902
GENETestsC1QTNF5
Target ValidationC1QTNF5
Huge Navigator C1QTNF5 [HugePedia]
snp3D : Map Gene to Disease114902
BioCentury BCIQC1QTNF5
ClinGenC1QTNF5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114902
Chemical/Pharm GKB GenePA25632
Clinical trialC1QTNF5
Miscellaneous
canSAR (ICR)C1QTNF5 (select the gene name)
DataMed IndexC1QTNF5
Probes
Litterature
PubMed42 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1QTNF5
EVEXC1QTNF5
GoPubMedC1QTNF5
iHOPC1QTNF5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 26 18:01:10 CEST 2019

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