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C1QTNF6 (C1q and TNF related 6)

Identity

Alias_symbol (synonym)CTRP6
ZACRP6
Other aliasCTFP6
HGNC (Hugo) C1QTNF6
LocusID (NCBI) 114904
Atlas_Id 878
Location 22q12.3  [Link to chromosome band 22q12]
Location_base_pair Starts at 37180166 and ends at 37188290 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C1QTNF6 (22q12.3) / C1QTNF6 (22q12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1QTNF6   14343
Cards
Entrez_Gene (NCBI)C1QTNF6  114904  C1q and TNF related 6
AliasesCTFP6; CTRP6; ZACRP6
GeneCards (Weizmann)C1QTNF6
Ensembl hg19 (Hinxton)ENSG00000133466 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000133466 [Gene_View]  chr22:37180166-37188290 [Contig_View]  C1QTNF6 [Vega]
ICGC DataPortalENSG00000133466
TCGA cBioPortalC1QTNF6
AceView (NCBI)C1QTNF6
Genatlas (Paris)C1QTNF6
WikiGenes114904
SOURCE (Princeton)C1QTNF6
Genetics Home Reference (NIH)C1QTNF6
Genomic and cartography
GoldenPath hg38 (UCSC)C1QTNF6  -     chr22:37180166-37188290 -  22q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1QTNF6  -     22q12.3   [Description]    (hg19-Feb_2009)
EnsemblC1QTNF6 - 22q12.3 [CytoView hg19]  C1QTNF6 - 22q12.3 [CytoView hg38]
Mapping of homologs : NCBIC1QTNF6 [Mapview hg19]  C1QTNF6 [Mapview hg38]
OMIM614910   
Gene and transcription
Genbank (Entrez)AF329842 AK128125 AK226149 AK314060 AY358374
RefSeq transcript (Entrez)NM_031910 NM_182486
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1QTNF6
Cluster EST : UnigeneHs.22011 [ NCBI ]
CGAP (NCI)Hs.22011
Alternative Splicing GalleryENSG00000133466
Gene ExpressionC1QTNF6 [ NCBI-GEO ]   C1QTNF6 [ EBI - ARRAY_EXPRESS ]   C1QTNF6 [ SEEK ]   C1QTNF6 [ MEM ]
Gene Expression Viewer (FireBrowse)C1QTNF6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114904
GTEX Portal (Tissue expression)C1QTNF6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXI9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXI9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXI9
Splice isoforms : SwissVarQ9BXI9
PhosPhoSitePlusQ9BXI9
Domaine pattern : Prosite (Expaxy)C1Q (PS50871)   
Domains : Interpro (EBI)C1q_dom    Collagen    Tumour_necrosis_fac-like_dom   
Domain families : Pfam (Sanger)C1q (PF00386)    Collagen (PF01391)   
Domain families : Pfam (NCBI)pfam00386    pfam01391   
Domain families : Smart (EMBL)C1Q (SM00110)  
Conserved Domain (NCBI)C1QTNF6
DMDM Disease mutations114904
Blocks (Seattle)C1QTNF6
SuperfamilyQ9BXI9
Human Protein AtlasENSG00000133466
Peptide AtlasQ9BXI9
HPRD12718
IPIIPI00909719   IPI00419276   IPI00443947   IPI00879516   
Protein Interaction databases
DIP (DOE-UCLA)Q9BXI9
IntAct (EBI)Q9BXI9
FunCoupENSG00000133466
BioGRIDC1QTNF6
STRING (EMBL)C1QTNF6
ZODIACC1QTNF6
Ontologies - Pathways
QuickGOQ9BXI9
Ontology : AmiGOprotein binding  collagen trimer  extracellular space  identical protein binding  protein heterotrimerization  
Ontology : EGO-EBIprotein binding  collagen trimer  extracellular space  identical protein binding  protein heterotrimerization  
NDEx NetworkC1QTNF6
Atlas of Cancer Signalling NetworkC1QTNF6
Wikipedia pathwaysC1QTNF6
Orthology - Evolution
OrthoDB114904
GeneTree (enSembl)ENSG00000133466
Phylogenetic Trees/Animal Genes : TreeFamC1QTNF6
HOVERGENQ9BXI9
HOGENOMQ9BXI9
Homologs : HomoloGeneC1QTNF6
Homology/Alignments : Family Browser (UCSC)C1QTNF6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1QTNF6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1QTNF6
dbVarC1QTNF6
ClinVarC1QTNF6
1000_GenomesC1QTNF6 
Exome Variant ServerC1QTNF6
ExAC (Exome Aggregation Consortium)C1QTNF6 (select the gene name)
Genetic variants : HAPMAP114904
Genomic Variants (DGV)C1QTNF6 [DGVbeta]
DECIPHERC1QTNF6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1QTNF6 
Mutations
ICGC Data PortalC1QTNF6 
TCGA Data PortalC1QTNF6 
Broad Tumor PortalC1QTNF6
OASIS PortalC1QTNF6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1QTNF6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1QTNF6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1QTNF6
DgiDB (Drug Gene Interaction Database)C1QTNF6
DoCM (Curated mutations)C1QTNF6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1QTNF6 (select a term)
intoGenC1QTNF6
Cancer3DC1QTNF6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614910   
Orphanet
MedgenC1QTNF6
Genetic Testing Registry C1QTNF6
NextProtQ9BXI9 [Medical]
TSGene114904
GENETestsC1QTNF6
Target ValidationC1QTNF6
Huge Navigator C1QTNF6 [HugePedia]
snp3D : Map Gene to Disease114904
BioCentury BCIQC1QTNF6
ClinGenC1QTNF6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114904
Chemical/Pharm GKB GenePA25633
Clinical trialC1QTNF6
Miscellaneous
canSAR (ICR)C1QTNF6 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1QTNF6
EVEXC1QTNF6
GoPubMedC1QTNF6
iHOPC1QTNF6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:56:28 CEST 2017

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