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C1QTNF8 (C1q and tumor necrosis factor related protein 8)

Identity

Alias_symbol (synonym)UNQ5829
CTRP8
Other alias
HGNC (Hugo) C1QTNF8
LocusID (NCBI) 390664
Atlas_Id 880
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 1138226 and ends at 1146244 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1QTNF8   31374
Cards
Entrez_Gene (NCBI)C1QTNF8  390664  C1q and tumor necrosis factor related protein 8
AliasesCTRP8; UNQ5829
GeneCards (Weizmann)C1QTNF8
Ensembl hg19 (Hinxton)ENSG00000184471 [Gene_View]  chr16:1138226-1146244 [Contig_View]  C1QTNF8 [Vega]
Ensembl hg38 (Hinxton)ENSG00000184471 [Gene_View]  chr16:1138226-1146244 [Contig_View]  C1QTNF8 [Vega]
ICGC DataPortalENSG00000184471
TCGA cBioPortalC1QTNF8
AceView (NCBI)C1QTNF8
Genatlas (Paris)C1QTNF8
WikiGenes390664
SOURCE (Princeton)C1QTNF8
Genetics Home Reference (NIH)C1QTNF8
Genomic and cartography
GoldenPath hg19 (UCSC)C1QTNF8  -     chr16:1138226-1146244 -  16p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C1QTNF8  -     16p13.3   [Description]    (hg38-Dec_2013)
EnsemblC1QTNF8 - 16p13.3 [CytoView hg19]  C1QTNF8 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIC1QTNF8 [Mapview hg19]  C1QTNF8 [Mapview hg38]
OMIM614147   
Gene and transcription
Genbank (Entrez)AY358832 BC156255 BC157036 FJ422561
RefSeq transcript (Entrez)NM_207419
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010393 NW_004929400
Consensus coding sequences : CCDS (NCBI)C1QTNF8
Cluster EST : UnigeneHs.527853 [ NCBI ]
CGAP (NCI)Hs.527853
Alternative Splicing GalleryENSG00000184471
Gene ExpressionC1QTNF8 [ NCBI-GEO ]   C1QTNF8 [ EBI - ARRAY_EXPRESS ]   C1QTNF8 [ SEEK ]   C1QTNF8 [ MEM ]
Gene Expression Viewer (FireBrowse)C1QTNF8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390664
GTEX Portal (Tissue expression)C1QTNF8
Protein : pattern, domain, 3D structure
UniProt/SwissProtP60827   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP60827  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP60827
Splice isoforms : SwissVarP60827
PhosPhoSitePlusP60827
Domaine pattern : Prosite (Expaxy)C1Q (PS50871)   
Domains : Interpro (EBI)C1q_dom    Collagen    Tumour_necrosis_fac-like_dom   
Domain families : Pfam (Sanger)C1q (PF00386)    Collagen (PF01391)   
Domain families : Pfam (NCBI)pfam00386    pfam01391   
Conserved Domain (NCBI)C1QTNF8
DMDM Disease mutations390664
Blocks (Seattle)C1QTNF8
SuperfamilyP60827
Human Protein AtlasENSG00000184471
Peptide AtlasP60827
HPRD12719
IPIIPI00410242   
Protein Interaction databases
DIP (DOE-UCLA)P60827
IntAct (EBI)P60827
FunCoupENSG00000184471
BioGRIDC1QTNF8
STRING (EMBL)C1QTNF8
ZODIACC1QTNF8
Ontologies - Pathways
QuickGOP60827
Ontology : AmiGOprotein binding  extracellular region  collagen trimer  
Ontology : EGO-EBIprotein binding  extracellular region  collagen trimer  
NDEx NetworkC1QTNF8
Atlas of Cancer Signalling NetworkC1QTNF8
Wikipedia pathwaysC1QTNF8
Orthology - Evolution
OrthoDB390664
GeneTree (enSembl)ENSG00000184471
Phylogenetic Trees/Animal Genes : TreeFamC1QTNF8
HOVERGENP60827
HOGENOMP60827
Homologs : HomoloGeneC1QTNF8
Homology/Alignments : Family Browser (UCSC)C1QTNF8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1QTNF8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1QTNF8
dbVarC1QTNF8
ClinVarC1QTNF8
1000_GenomesC1QTNF8 
Exome Variant ServerC1QTNF8
ExAC (Exome Aggregation Consortium)C1QTNF8 (select the gene name)
Genetic variants : HAPMAP390664
Genomic Variants (DGV)C1QTNF8 [DGVbeta]
DECIPHER (Syndromes)16:1138226-1146244  ENSG00000184471
CONAN: Copy Number AnalysisC1QTNF8 
Mutations
ICGC Data PortalC1QTNF8 
TCGA Data PortalC1QTNF8 
Broad Tumor PortalC1QTNF8
OASIS PortalC1QTNF8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1QTNF8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1QTNF8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1QTNF8
DgiDB (Drug Gene Interaction Database)C1QTNF8
DoCM (Curated mutations)C1QTNF8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1QTNF8 (select a term)
intoGenC1QTNF8
Cancer3DC1QTNF8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614147   
Orphanet
MedgenC1QTNF8
Genetic Testing Registry C1QTNF8
NextProtP60827 [Medical]
TSGene390664
GENETestsC1QTNF8
Huge Navigator C1QTNF8 [HugePedia]
snp3D : Map Gene to Disease390664
BioCentury BCIQC1QTNF8
ClinGenC1QTNF8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390664
Chemical/Pharm GKB GenePA134914298
Clinical trialC1QTNF8
Miscellaneous
canSAR (ICR)C1QTNF8 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1QTNF8
EVEXC1QTNF8
GoPubMedC1QTNF8
iHOPC1QTNF8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:54:32 CEST 2017

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