Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C1QTNF9 (C1q and TNF related 9)

Identity

Alias_symbol (synonym)MGC48915
CTRP9
C1QTNF9A
AQL1
Other alias
HGNC (Hugo) C1QTNF9
LocusID (NCBI) 338872
Atlas_Id 43084
Location 13q12.12  [Link to chromosome band 13q12]
Location_base_pair Starts at 24309578 and ends at 24322531 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1QTNF9   28732
Cards
Entrez_Gene (NCBI)C1QTNF9  338872  C1q and TNF related 9
AliasesAQL1; C1QTNF9A; CTRP9
GeneCards (Weizmann)C1QTNF9
Ensembl hg19 (Hinxton)ENSG00000240654 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000240654 [Gene_View]  chr13:24309578-24322531 [Contig_View]  C1QTNF9 [Vega]
ICGC DataPortalENSG00000240654
TCGA cBioPortalC1QTNF9
AceView (NCBI)C1QTNF9
Genatlas (Paris)C1QTNF9
WikiGenes338872
SOURCE (Princeton)C1QTNF9
Genetics Home Reference (NIH)C1QTNF9
Genomic and cartography
GoldenPath hg38 (UCSC)C1QTNF9  -     chr13:24309578-24322531 +  13q12.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1QTNF9  -     13q12.12   [Description]    (hg19-Feb_2009)
EnsemblC1QTNF9 - 13q12.12 [CytoView hg19]  C1QTNF9 - 13q12.12 [CytoView hg38]
Mapping of homologs : NCBIC1QTNF9 [Mapview hg19]  C1QTNF9 [Mapview hg38]
OMIM614285   
Gene and transcription
Genbank (Entrez)AY358145 BC040438 BI767787 BQ882976 HQ448535
RefSeq transcript (Entrez)NM_001303137 NM_001303138 NM_178540
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1QTNF9
Cluster EST : UnigeneHs.362854 [ NCBI ]
CGAP (NCI)Hs.362854
Alternative Splicing GalleryENSG00000240654
Gene ExpressionC1QTNF9 [ NCBI-GEO ]   C1QTNF9 [ EBI - ARRAY_EXPRESS ]   C1QTNF9 [ SEEK ]   C1QTNF9 [ MEM ]
Gene Expression Viewer (FireBrowse)C1QTNF9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)338872
GTEX Portal (Tissue expression)C1QTNF9
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C862   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C862  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C862
Splice isoforms : SwissVarP0C862
PhosPhoSitePlusP0C862
Domaine pattern : Prosite (Expaxy)C1Q (PS50871)   
Domains : Interpro (EBI)C1q_dom    Collagen    Tumour_necrosis_fac-like_dom   
Domain families : Pfam (Sanger)C1q (PF00386)    Collagen (PF01391)   
Domain families : Pfam (NCBI)pfam00386    pfam01391   
Domain families : Smart (EMBL)C1Q (SM00110)  
Conserved Domain (NCBI)C1QTNF9
DMDM Disease mutations338872
Blocks (Seattle)C1QTNF9
SuperfamilyP0C862
Human Protein AtlasENSG00000240654
Peptide AtlasP0C862
HPRD14659
IPIIPI00552240   IPI00943234   
Protein Interaction databases
DIP (DOE-UCLA)P0C862
IntAct (EBI)P0C862
FunCoupENSG00000240654
BioGRIDC1QTNF9
STRING (EMBL)C1QTNF9
ZODIACC1QTNF9
Ontologies - Pathways
QuickGOP0C862
Ontology : AmiGOhormone activity  protein binding  extracellular region  collagen trimer  identical protein binding  
Ontology : EGO-EBIhormone activity  protein binding  extracellular region  collagen trimer  identical protein binding  
NDEx NetworkC1QTNF9
Atlas of Cancer Signalling NetworkC1QTNF9
Wikipedia pathwaysC1QTNF9
Orthology - Evolution
OrthoDB338872
GeneTree (enSembl)ENSG00000240654
Phylogenetic Trees/Animal Genes : TreeFamC1QTNF9
HOVERGENP0C862
HOGENOMP0C862
Homologs : HomoloGeneC1QTNF9
Homology/Alignments : Family Browser (UCSC)C1QTNF9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1QTNF9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1QTNF9
dbVarC1QTNF9
ClinVarC1QTNF9
1000_GenomesC1QTNF9 
Exome Variant ServerC1QTNF9
ExAC (Exome Aggregation Consortium)C1QTNF9 (select the gene name)
Genetic variants : HAPMAP338872
Genomic Variants (DGV)C1QTNF9 [DGVbeta]
DECIPHERC1QTNF9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1QTNF9 
Mutations
ICGC Data PortalC1QTNF9 
TCGA Data PortalC1QTNF9 
Broad Tumor PortalC1QTNF9
OASIS PortalC1QTNF9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1QTNF9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1QTNF9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1QTNF9
DgiDB (Drug Gene Interaction Database)C1QTNF9
DoCM (Curated mutations)C1QTNF9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1QTNF9 (select a term)
intoGenC1QTNF9
Cancer3DC1QTNF9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614285   
Orphanet
MedgenC1QTNF9
Genetic Testing Registry C1QTNF9
NextProtP0C862 [Medical]
TSGene338872
GENETestsC1QTNF9
Target ValidationC1QTNF9
Huge Navigator C1QTNF9 [HugePedia]
snp3D : Map Gene to Disease338872
BioCentury BCIQC1QTNF9
ClinGenC1QTNF9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD338872
Chemical/Pharm GKB GenePA145008937
Clinical trialC1QTNF9
Miscellaneous
canSAR (ICR)C1QTNF9 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1QTNF9
EVEXC1QTNF9
GoPubMedC1QTNF9
iHOPC1QTNF9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:56:28 CEST 2017

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