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C1QTNF9B-AS1 (C1QTNF9B antisense RNA 1)

Identity

Alias_namesC1QTNF9B antisense RNA 1 (non-protein coding)
Alias_symbol (synonym)PCOTH
Other alias
HGNC (Hugo) C1QTNF9B-AS1
LocusID (NCBI) 542767
Atlas_Id 52387
Location 13q12.12  [Link to chromosome band 13q12]
Location_base_pair Starts at 24463028 and ends at 24466242 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1QTNF9B-AS1   39839
Cards
Entrez_Gene (NCBI)C1QTNF9B-AS1  542767  C1QTNF9B antisense RNA 1
AliasesPCOTH
GeneCards (Weizmann)C1QTNF9B-AS1
Ensembl hg19 (Hinxton) [Gene_View]  chr13:24463028-24466242 [Contig_View]  C1QTNF9B-AS1 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr13:24463028-24466242 [Contig_View]  C1QTNF9B-AS1 [Vega]
TCGA cBioPortalC1QTNF9B-AS1
AceView (NCBI)C1QTNF9B-AS1
Genatlas (Paris)C1QTNF9B-AS1
WikiGenes542767
SOURCE (Princeton)C1QTNF9B-AS1
Genetics Home Reference (NIH)C1QTNF9B-AS1
Genomic and cartography
GoldenPath hg19 (UCSC)C1QTNF9B-AS1  -     chr13:24463028-24466242 +  13q12.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C1QTNF9B-AS1  -     13q12.12   [Description]    (hg38-Dec_2013)
EnsemblC1QTNF9B-AS1 - 13q12.12 [CytoView hg19]  C1QTNF9B-AS1 - 13q12.12 [CytoView hg38]
Mapping of homologs : NCBIC1QTNF9B-AS1 [Mapview hg19]  C1QTNF9B-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB113650 BC015452 BC073902 BC132842 BC132846
RefSeq transcript (Entrez)NM_001014442 NM_001135816
RefSeq genomic (Entrez)NC_000013 NC_018924 NT_024524 NW_004929388
Consensus coding sequences : CCDS (NCBI)C1QTNF9B-AS1
Cluster EST : UnigeneHs.642624 [ NCBI ]
CGAP (NCI)Hs.642624
Gene ExpressionC1QTNF9B-AS1 [ NCBI-GEO ]   C1QTNF9B-AS1 [ EBI - ARRAY_EXPRESS ]   C1QTNF9B-AS1 [ SEEK ]   C1QTNF9B-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)C1QTNF9B-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)542767
GTEX Portal (Tissue expression)C1QTNF9B-AS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ58A44   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ58A44  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ58A44
Splice isoforms : SwissVarQ58A44
PhosPhoSitePlusQ58A44
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C1QTNF9B-AS1
DMDM Disease mutations542767
Blocks (Seattle)C1QTNF9B-AS1
SuperfamilyQ58A44
Peptide AtlasQ58A44
HPRD18678
IPIIPI00555685   IPI00914609   
Protein Interaction databases
DIP (DOE-UCLA)Q58A44
IntAct (EBI)Q58A44
BioGRIDC1QTNF9B-AS1
STRING (EMBL)C1QTNF9B-AS1
ZODIACC1QTNF9B-AS1
Ontologies - Pathways
QuickGOQ58A44
Ontology : AmiGOprotein binding  cytoplasm  
Ontology : EGO-EBIprotein binding  cytoplasm  
NDEx NetworkC1QTNF9B-AS1
Atlas of Cancer Signalling NetworkC1QTNF9B-AS1
Wikipedia pathwaysC1QTNF9B-AS1
Orthology - Evolution
OrthoDB542767
Phylogenetic Trees/Animal Genes : TreeFamC1QTNF9B-AS1
HOVERGENQ58A44
HOGENOMQ58A44
Homologs : HomoloGeneC1QTNF9B-AS1
Homology/Alignments : Family Browser (UCSC)C1QTNF9B-AS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1QTNF9B-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1QTNF9B-AS1
dbVarC1QTNF9B-AS1
ClinVarC1QTNF9B-AS1
1000_GenomesC1QTNF9B-AS1 
Exome Variant ServerC1QTNF9B-AS1
ExAC (Exome Aggregation Consortium)C1QTNF9B-AS1 (select the gene name)
Genetic variants : HAPMAP542767
Genomic Variants (DGV)C1QTNF9B-AS1 [DGVbeta]
DECIPHER (Syndromes)13:24463028-24466242  
CONAN: Copy Number AnalysisC1QTNF9B-AS1 
Mutations
ICGC Data PortalC1QTNF9B-AS1 
TCGA Data PortalC1QTNF9B-AS1 
Broad Tumor PortalC1QTNF9B-AS1
OASIS PortalC1QTNF9B-AS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDC1QTNF9B-AS1
BioMutasearch C1QTNF9B-AS1
DgiDB (Drug Gene Interaction Database)C1QTNF9B-AS1
DoCM (Curated mutations)C1QTNF9B-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1QTNF9B-AS1 (select a term)
intoGenC1QTNF9B-AS1
Cancer3DC1QTNF9B-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC1QTNF9B-AS1
Genetic Testing Registry C1QTNF9B-AS1
NextProtQ58A44 [Medical]
TSGene542767
GENETestsC1QTNF9B-AS1
Huge Navigator C1QTNF9B-AS1 [HugePedia]
snp3D : Map Gene to Disease542767
BioCentury BCIQC1QTNF9B-AS1
ClinGenC1QTNF9B-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD542767
Clinical trialC1QTNF9B-AS1
Miscellaneous
canSAR (ICR)C1QTNF9B-AS1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1QTNF9B-AS1
EVEXC1QTNF9B-AS1
GoPubMedC1QTNF9B-AS1
iHOPC1QTNF9B-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:58:10 CET 2017

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