Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C1QTNF9B (C1q and tumor necrosis factor related protein 9B)

Identity

Alias_symbol (synonym)CTRP9B
Other alias
HGNC (Hugo) C1QTNF9B
LocusID (NCBI) 387911
Atlas_Id 51435
Location 13q12.12  [Link to chromosome band 13q12]
Location_base_pair Starts at 24465238 and ends at 24471145 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1QTNF9B   34072
Cards
Entrez_Gene (NCBI)C1QTNF9B  387911  C1q and tumor necrosis factor related protein 9B
AliasesCTRP9B
GeneCards (Weizmann)C1QTNF9B
Ensembl hg19 (Hinxton)ENSG00000205863 [Gene_View]  chr13:24465238-24471145 [Contig_View]  C1QTNF9B [Vega]
Ensembl hg38 (Hinxton)ENSG00000205863 [Gene_View]  chr13:24465238-24471145 [Contig_View]  C1QTNF9B [Vega]
ICGC DataPortalENSG00000205863
TCGA cBioPortalC1QTNF9B
AceView (NCBI)C1QTNF9B
Genatlas (Paris)C1QTNF9B
WikiGenes387911
SOURCE (Princeton)C1QTNF9B
Genetics Home Reference (NIH)C1QTNF9B
Genomic and cartography
GoldenPath hg19 (UCSC)C1QTNF9B  -     chr13:24465238-24471145 -  13q12.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C1QTNF9B  -     13q12.12   [Description]    (hg38-Dec_2013)
EnsemblC1QTNF9B - 13q12.12 [CytoView hg19]  C1QTNF9B - 13q12.12 [CytoView hg38]
Mapping of homologs : NCBIC1QTNF9B [Mapview hg19]  C1QTNF9B [Mapview hg38]
OMIM614148   
Gene and transcription
Genbank (Entrez)BC110413 BC137004 BC137006 BC144450
RefSeq transcript (Entrez)NM_001007537
RefSeq genomic (Entrez)NC_000013 NC_018924 NT_024524 NW_004929388
Consensus coding sequences : CCDS (NCBI)C1QTNF9B
Cluster EST : UnigeneHs.740810 [ NCBI ]
CGAP (NCI)Hs.740810
Alternative Splicing GalleryENSG00000205863
Gene ExpressionC1QTNF9B [ NCBI-GEO ]   C1QTNF9B [ EBI - ARRAY_EXPRESS ]   C1QTNF9B [ SEEK ]   C1QTNF9B [ MEM ]
Gene Expression Viewer (FireBrowse)C1QTNF9B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387911
GTEX Portal (Tissue expression)C1QTNF9B
Protein : pattern, domain, 3D structure
UniProt/SwissProtB2RNN3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtB2RNN3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProB2RNN3
Splice isoforms : SwissVarB2RNN3
PhosPhoSitePlusB2RNN3
Domaine pattern : Prosite (Expaxy)C1Q (PS50871)   
Domains : Interpro (EBI)C1q_dom    Collagen    Tumour_necrosis_fac-like_dom   
Domain families : Pfam (Sanger)C1q (PF00386)    Collagen (PF01391)   
Domain families : Pfam (NCBI)pfam00386    pfam01391   
Domain families : Smart (EMBL)C1Q (SM00110)  
Conserved Domain (NCBI)C1QTNF9B
DMDM Disease mutations387911
Blocks (Seattle)C1QTNF9B
SuperfamilyB2RNN3
Human Protein AtlasENSG00000205863
Peptide AtlasB2RNN3
HPRD17369
IPIIPI00550862   IPI00903064   IPI00943247   IPI00642724   
Protein Interaction databases
DIP (DOE-UCLA)B2RNN3
IntAct (EBI)B2RNN3
FunCoupENSG00000205863
BioGRIDC1QTNF9B
STRING (EMBL)C1QTNF9B
ZODIACC1QTNF9B
Ontologies - Pathways
QuickGOB2RNN3
Ontology : AmiGOprotein binding  collagen trimer  extracellular exosome  
Ontology : EGO-EBIprotein binding  collagen trimer  extracellular exosome  
NDEx NetworkC1QTNF9B
Atlas of Cancer Signalling NetworkC1QTNF9B
Wikipedia pathwaysC1QTNF9B
Orthology - Evolution
OrthoDB387911
GeneTree (enSembl)ENSG00000205863
Phylogenetic Trees/Animal Genes : TreeFamC1QTNF9B
HOVERGENB2RNN3
HOGENOMB2RNN3
Homologs : HomoloGeneC1QTNF9B
Homology/Alignments : Family Browser (UCSC)C1QTNF9B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1QTNF9B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1QTNF9B
dbVarC1QTNF9B
ClinVarC1QTNF9B
1000_GenomesC1QTNF9B 
Exome Variant ServerC1QTNF9B
ExAC (Exome Aggregation Consortium)C1QTNF9B (select the gene name)
Genetic variants : HAPMAP387911
Genomic Variants (DGV)C1QTNF9B [DGVbeta]
DECIPHER (Syndromes)13:24465238-24471145  ENSG00000205863
CONAN: Copy Number AnalysisC1QTNF9B 
Mutations
ICGC Data PortalC1QTNF9B 
TCGA Data PortalC1QTNF9B 
Broad Tumor PortalC1QTNF9B
OASIS PortalC1QTNF9B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1QTNF9B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1QTNF9B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1QTNF9B
DgiDB (Drug Gene Interaction Database)C1QTNF9B
DoCM (Curated mutations)C1QTNF9B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1QTNF9B (select a term)
intoGenC1QTNF9B
Cancer3DC1QTNF9B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614148   
Orphanet
MedgenC1QTNF9B
Genetic Testing Registry C1QTNF9B
NextProtB2RNN3 [Medical]
TSGene387911
GENETestsC1QTNF9B
Huge Navigator C1QTNF9B [HugePedia]
snp3D : Map Gene to Disease387911
BioCentury BCIQC1QTNF9B
ClinGenC1QTNF9B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387911
Clinical trialC1QTNF9B
Miscellaneous
canSAR (ICR)C1QTNF9B (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1QTNF9B
EVEXC1QTNF9B
GoPubMedC1QTNF9B
iHOPC1QTNF9B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:58:10 CET 2017

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