Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C1RL (complement C1r subcomponent like)

Identity

Alias_namescomplement component 1, r subcomponent-like
Alias_symbol (synonym)C1r-LP
C1RL1
Other aliasC1RLP
CLSPa
HGNC (Hugo) C1RL
LocusID (NCBI) 51279
Atlas_Id 61104
Location 12p13.31  [Link to chromosome band 12p13]
Location_base_pair Starts at 7094550 and ends at 7109278 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C1RL (12p13.31) / EVI5 (1p22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1RL   21265
Cards
Entrez_Gene (NCBI)C1RL  51279  complement C1r subcomponent like
AliasesC1RL1; C1RLP; C1r-LP; CLSPa
GeneCards (Weizmann)C1RL
Ensembl hg19 (Hinxton)ENSG00000139178 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139178 [Gene_View]  chr12:7094550-7109278 [Contig_View]  C1RL [Vega]
ICGC DataPortalENSG00000139178
TCGA cBioPortalC1RL
AceView (NCBI)C1RL
Genatlas (Paris)C1RL
WikiGenes51279
SOURCE (Princeton)C1RL
Genetics Home Reference (NIH)C1RL
Genomic and cartography
GoldenPath hg38 (UCSC)C1RL  -     chr12:7094550-7109278 -  12p13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1RL  -     12p13.31   [Description]    (hg19-Feb_2009)
EnsemblC1RL - 12p13.31 [CytoView hg19]  C1RL - 12p13.31 [CytoView hg38]
Mapping of homologs : NCBIC1RL [Mapview hg19]  C1RL [Mapview hg38]
OMIM608974   
Gene and transcription
Genbank (Entrez)AF178985 AK024084 AK222802 AK314299 AW450562
RefSeq transcript (Entrez)NM_001297640 NM_001297642 NM_001297643 NM_016546
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1RL
Cluster EST : UnigeneHs.631730 [ NCBI ]
CGAP (NCI)Hs.631730
Alternative Splicing GalleryENSG00000139178
Gene ExpressionC1RL [ NCBI-GEO ]   C1RL [ EBI - ARRAY_EXPRESS ]   C1RL [ SEEK ]   C1RL [ MEM ]
Gene Expression Viewer (FireBrowse)C1RL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51279
GTEX Portal (Tissue expression)C1RL
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NZP8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NZP8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NZP8
Splice isoforms : SwissVarQ9NZP8
Catalytic activity : Enzyme3.4.21.- [ Enzyme-Expasy ]   3.4.21.-3.4.21.- [ IntEnz-EBI ]   3.4.21.- [ BRENDA ]   3.4.21.- [ KEGG ]   
PhosPhoSitePlusQ9NZP8
Domaine pattern : Prosite (Expaxy)CUB (PS01180)    TRYPSIN_DOM (PS50240)    TRYPSIN_SER (PS00135)   
Domains : Interpro (EBI)CUB_dom    Peptidase_S1_PA    Peptidase_S1A    Sushi_SCR_CCP_dom    Trypsin_dom    TRYPSIN_SER   
Domain families : Pfam (Sanger)CUB (PF00431)    Trypsin (PF00089)   
Domain families : Pfam (NCBI)pfam00431    pfam00089   
Domain families : Smart (EMBL)CUB (SM00042)  Tryp_SPc (SM00020)  
Conserved Domain (NCBI)C1RL
DMDM Disease mutations51279
Blocks (Seattle)C1RL
SuperfamilyQ9NZP8
Human Protein AtlasENSG00000139178
Peptide AtlasQ9NZP8
HPRD07093
IPIIPI00009793   IPI00872573   IPI01011472   IPI01013691   IPI01011200   IPI01009815   IPI01012055   IPI01010828   IPI01009558   IPI00441082   
Protein Interaction databases
DIP (DOE-UCLA)Q9NZP8
IntAct (EBI)Q9NZP8
FunCoupENSG00000139178
BioGRIDC1RL
STRING (EMBL)C1RL
ZODIACC1RL
Ontologies - Pathways
QuickGOQ9NZP8
Ontology : AmiGOserine-type endopeptidase activity  extracellular space  proteolysis  complement activation, classical pathway  innate immune response  extracellular exosome  
Ontology : EGO-EBIserine-type endopeptidase activity  extracellular space  proteolysis  complement activation, classical pathway  innate immune response  extracellular exosome  
NDEx NetworkC1RL
Atlas of Cancer Signalling NetworkC1RL
Wikipedia pathwaysC1RL
Orthology - Evolution
OrthoDB51279
GeneTree (enSembl)ENSG00000139178
Phylogenetic Trees/Animal Genes : TreeFamC1RL
HOVERGENQ9NZP8
HOGENOMQ9NZP8
Homologs : HomoloGeneC1RL
Homology/Alignments : Family Browser (UCSC)C1RL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1RL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1RL
dbVarC1RL
ClinVarC1RL
1000_GenomesC1RL 
Exome Variant ServerC1RL
ExAC (Exome Aggregation Consortium)C1RL (select the gene name)
Genetic variants : HAPMAP51279
Genomic Variants (DGV)C1RL [DGVbeta]
DECIPHERC1RL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1RL 
Mutations
ICGC Data PortalC1RL 
TCGA Data PortalC1RL 
Broad Tumor PortalC1RL
OASIS PortalC1RL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1RL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1RL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1RL
DgiDB (Drug Gene Interaction Database)C1RL
DoCM (Curated mutations)C1RL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1RL (select a term)
intoGenC1RL
Cancer3DC1RL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608974   
Orphanet
MedgenC1RL
Genetic Testing Registry C1RL
NextProtQ9NZP8 [Medical]
TSGene51279
GENETestsC1RL
Huge Navigator C1RL [HugePedia]
snp3D : Map Gene to Disease51279
BioCentury BCIQC1RL
ClinGenC1RL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51279
Chemical/Pharm GKB GenePA134957759
Clinical trialC1RL
Miscellaneous
canSAR (ICR)C1RL (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1RL
EVEXC1RL
GoPubMedC1RL
iHOPC1RL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:03:13 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.