Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C1orf100 (chromosome 1 open reading frame 100)

Identity

Other alias-
HGNC (Hugo) C1orf100
LocusID (NCBI) 200159
Atlas_Id 61043
Location 1q44  [Link to chromosome band 1q44]
Location_base_pair Starts at 244352635 and ends at 244389086 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CEP170 (1q43) / C1orf100 (1q44)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C1orf100   30435
Cards
Entrez_Gene (NCBI)C1orf100  200159  chromosome 1 open reading frame 100
Aliases
GeneCards (Weizmann)C1orf100
Ensembl hg19 (Hinxton)ENSG00000173728 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173728 [Gene_View]  chr1:244352635-244389086 [Contig_View]  C1orf100 [Vega]
ICGC DataPortalENSG00000173728
TCGA cBioPortalC1orf100
AceView (NCBI)C1orf100
Genatlas (Paris)C1orf100
WikiGenes200159
SOURCE (Princeton)C1orf100
Genetics Home Reference (NIH)C1orf100
Genomic and cartography
GoldenPath hg38 (UCSC)C1orf100  -     chr1:244352635-244389086 +  1q44   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C1orf100  -     1q44   [Description]    (hg19-Feb_2009)
EnsemblC1orf100 - 1q44 [CytoView hg19]  C1orf100 - 1q44 [CytoView hg38]
Mapping of homologs : NCBIC1orf100 [Mapview hg19]  C1orf100 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC054479 BX099227 HY055397
RefSeq transcript (Entrez)NM_001012970 NM_001276348 NM_001276349
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C1orf100
Cluster EST : UnigeneHs.442703 [ NCBI ]
CGAP (NCI)Hs.442703
Alternative Splicing GalleryENSG00000173728
Gene ExpressionC1orf100 [ NCBI-GEO ]   C1orf100 [ EBI - ARRAY_EXPRESS ]   C1orf100 [ SEEK ]   C1orf100 [ MEM ]
Gene Expression Viewer (FireBrowse)C1orf100 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)200159
GTEX Portal (Tissue expression)C1orf100
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5SVJ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5SVJ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5SVJ3
Splice isoforms : SwissVarQ5SVJ3
PhosPhoSitePlusQ5SVJ3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C1orf100
DMDM Disease mutations200159
Blocks (Seattle)C1orf100
SuperfamilyQ5SVJ3
Human Protein AtlasENSG00000173728
Peptide AtlasQ5SVJ3
HPRD13168
IPIIPI00145212   IPI00554748   
Protein Interaction databases
DIP (DOE-UCLA)Q5SVJ3
IntAct (EBI)Q5SVJ3
FunCoupENSG00000173728
BioGRIDC1orf100
STRING (EMBL)C1orf100
ZODIACC1orf100
Ontologies - Pathways
QuickGOQ5SVJ3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC1orf100
Atlas of Cancer Signalling NetworkC1orf100
Wikipedia pathwaysC1orf100
Orthology - Evolution
OrthoDB200159
GeneTree (enSembl)ENSG00000173728
Phylogenetic Trees/Animal Genes : TreeFamC1orf100
HOVERGENQ5SVJ3
HOGENOMQ5SVJ3
Homologs : HomoloGeneC1orf100
Homology/Alignments : Family Browser (UCSC)C1orf100
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC1orf100 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C1orf100
dbVarC1orf100
ClinVarC1orf100
1000_GenomesC1orf100 
Exome Variant ServerC1orf100
ExAC (Exome Aggregation Consortium)C1orf100 (select the gene name)
Genetic variants : HAPMAP200159
Genomic Variants (DGV)C1orf100 [DGVbeta]
DECIPHERC1orf100 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC1orf100 
Mutations
ICGC Data PortalC1orf100 
TCGA Data PortalC1orf100 
Broad Tumor PortalC1orf100
OASIS PortalC1orf100 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC1orf100  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC1orf100
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C1orf100
DgiDB (Drug Gene Interaction Database)C1orf100
DoCM (Curated mutations)C1orf100 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C1orf100 (select a term)
intoGenC1orf100
Cancer3DC1orf100(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC1orf100
Genetic Testing Registry C1orf100
NextProtQ5SVJ3 [Medical]
TSGene200159
GENETestsC1orf100
Target ValidationC1orf100
Huge Navigator C1orf100 [HugePedia]
snp3D : Map Gene to Disease200159
BioCentury BCIQC1orf100
ClinGenC1orf100
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD200159
Chemical/Pharm GKB GenePA142672484
Clinical trialC1orf100
Miscellaneous
canSAR (ICR)C1orf100 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC1orf100
EVEXC1orf100
GoPubMedC1orf100
iHOPC1orf100
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 16:10:45 CEST 2017

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